Trichinella spiralis: Tsp_09908
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Entry
Tsp_09908 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K11293
protein HIRA/HIR1
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_09908
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
Tsp_09908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_CAF1B_HIR1
WD40
ThiF
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
UBA_E1_SCCH
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
HIRA_B
UAE_UbL
WDR90_beta-prop_4th
Shikimate_DH
NAD_binding_7
Pyr_redox_2
Motif
Other DBs
NCBI-GeneID:
10907927
NCBI-ProteinID:
XP_003370696
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MVIWRARPSGGFFKYFIDAQLAQWRKQPLSGAQRSSVNVSARGPLDHLSIRTKIQSTKIA
SDFTSKKLLVVGAGGIGCELLKTLVLSGFADIEVIDMDTIEVTNLNRQFLFRKEHVEARS
YVNRMCLICHLPLIDGGSLGRKGQVDVIIRNITECFDCHKHSPSHDYPSCTIRNTPTEPA
HCVIWAQHLFNQLFGEVNSDQDVSPESLVTGEEFEATPQVQPLTNVISLQDLAKNHNYDP
ELFVNDIEYLRTMEKLWEDRQPPTPLNLRWFRIGLHENLQGTEQKDWESRDQNVWTLKEC
FKVAVSCLAVLKERAKNAPLIWQKDDPVCVDFVTAFTNFRCHVFNIEKIPRFEAETIAGR
VVPAIVSTNAVVAGLMVLKLYTVLERRKDFYGSVAISSQEGMPRVLSIAPSTEVTGCEYC
VAVKEVHMQRFSIAKELSVMKPEIMLEVASPRLLFAHDYKCNLSAEEGKKTLSEISVKHG
SLLRCEDGATFTNIPRRFTTAIHCACEQFERLIYGEVRSQSIYGLSQINPTVFKVNFDSI
ELIGNEVHKAELGLPIYSVDIEPAGNRFATGGQSVTGIGLIVLWSLKPVIDVENETNDKI
PLLLCRLEAHSTCINCIRWSSDSRYLASAGTDQAVKIWRFVSYIPNVQSRVTAVEHWKCV
STLHGHAGDVLHLSWSPGDRYLASCGIDNIIIIWNAKKFPEKITSLVGHEGFVKGVCWDP
IGKYLASQSDDRSLRIWSTVDWNVVHKFRRPFKEAPCATHTLRLDWSPDGLLLATAHAVN
NGGPVSKIIERNGWKCELDFAGHRMAITCVSNVCSCCAVGSKDRSLSVWSASENRPVVVL
TDIFESSISDISWDSSGLILIAASVDGSVINKLRRYYGNVDVGLLGLQRKSDQNSNKIIE
DADYVMTHAKVIANRSNENGVNGGVCASTTAVRTAPPPSTRDSNWNVQLETRTKSGKRRI
TPINVEVVAEVDTDNNSQPPWIREGVGLGVAGKAKGLIDEKMTVVDNAERWSGLNSTTVE
PLVPLVASSSSSAFASKSTSVKLRKGDGFDAGGKSISKSSEDHSGGIVEEFLEKSKSELK
FDKKKSWHQKGKKALKHAQRESTISQTFPSSETEVEVETDFQTHQTVAVSSSSKQKTPTH
RLEALKVLHLLMCSVVVDEVIRTGKDGEGGVDWGEGGQ
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggtcatttggcgtgctcgtccatctggcggcttcttcaaatactttattgacgcgcaa
ctggcgcaatggcgtaaacagccgttgtcaggcgcgcaacggtcatcggtcaacgtcagc
gcaagggggccgctagaccacctttcaatacgaacaaagatacagtccacaaagatcgcg
agcgattttacgagtaaaaaactgctagttgtcggtgctggaggtatcggatgcgaactt
ttaaaaacgcttgtattaagtggatttgcagatattgaagtgattgatatggataccatc
gaggtaacaaatttgaatcgacagtttttgtttcgtaaagagcacgtcgaagccaggtct
tatgtcaatcgcatgtgtttgatatgtcatcttccattgattgacggcggatctttgggc
cgaaaaggacaagttgacgtgataatacggaatattaccgaatgtttcgattgtcacaaa
cactcgccatcgcatgactatccaagttgtactattcgtaatactcctacggaacctgct
cattgtgttatttgggcacagcatttattcaaccaactgtttggagaggtaaattcagat
caagatgtgtcaccagagagtttagtaactggtgaagagtttgaagcaactccacaagtt
caacctcttaccaacgttatcagtttgcaggatttggctaagaatcataattatgaccct
gaactctttgttaacgatattgaatatcttcgcactatggaaaaattatgggaagatcgc
cagccacccactccgttaaatttgcggtggttccgtattggacttcatgaaaacttgcaa
gggacagaacaaaaggactgggaatcacgcgatcaaaatgtttggactttgaaagaatgt
tttaaagtggcagtatcttgcttagcagtacttaaagaaagagctaaaaatgctccattg
atttggcaaaaggatgatccggtatgcgtggattttgtgactgcatttacgaattttcgt
tgtcatgtttttaatattgaaaagatacctcgtttcgaagctgaaacaattgccggtcgg
gttgtgccagctattgtgagtacaaatgcagtggtagctggactgatggttttgaaattg
tacacagttttggagcgacggaaagatttctacggatcggttgccatttcttcgcaagaa
ggaatgccaagagttttatccatcgctccatcaactgaagtaactggatgtgaatattgt
gttgctgttaaggaggtacacatgcaacgattctctattgcgaaagaattgtctgtgatg
aaacctgaaatcatgctggaagttgcgtctcctcgactgctttttgcgcatgattacaaa
tgtaacttatctgcagaagaaggaaagaaaacactttctgaaatttctgtcaaacatgga
tcgcttctccgttgcgaagatggcgcaacatttacaaatattccccggagatttacgaca
gcgattcactgcgcgtgtgagcagtttgaacgtttaatatacggcgaagtacgtagtcaa
tctatttacggtctttcacaaataaatccaacggtgtttaaggtaaattttgacagcatc
gaattaattggaaatgaagttcataaagccgaactggggcttcctatatattcggtggac
attgaacctgctggaaatcgatttgccaccggtggtcaaagtgtaacgggtattggattg
atagttctgtggagcttgaagccagtaattgacgtagaaaatgaaactaacgacaagatt
ccgttgttgctttgccgtctagaagcgcattcaacttgtatcaattgtatacgttggtca
agtgattcgcgttatttagcttcagctggcacggatcaagctgtgaaaatttggcgcttt
gttagttatattccaaatgttcaaagtcgtgtaactgcagttgaacactggaaatgcgta
agtacattgcatggtcacgctggagatgtattgcatttgtcatggtctcctggtgatcga
tatttggcttcttgtggaatagacaatattattatcatatggaatgcaaaaaagtttcca
gaaaaaataacatcactggttggtcacgaaggttttgttaaaggtgtttgttgggatccg
attggtaaatatttagcttcacagagcgatgataggtcgttgcgaatttggtcgacagtg
gattggaacgtggtgcataaattccgtcgtccatttaaagaggccccctgcgctacacac
acactgaggttggattggtcaccggatggtctgctgttggcaactgctcatgcagtcaac
aacggtgggccggtatcgaaaattatagaacgaaatggctggaaatgcgaactagacttt
gctggtcatcgaatggccatcacgtgcgtttcgaacgtatgcagctgttgtgctgttgga
agcaaagatcgttctctgagcgtttggtcggccagcgaaaatcgaccagttgtagtgctg
acggatattttcgaatccagcatttctgacatatcttgggatagcagtgggttgatattg
attgctgcatcggtcgacggttctgtgattaataagcttcgtcgatattacggtaacgtg
gatgttggcctgttgggtttgcagcggaagtcggatcaaaattcgaacaaaattatcgaa
gacgcagactacgtgatgacccatgcaaaagtcattgcaaatcgttcaaatgaaaatggt
gttaacggtggcgtttgcgcctccactacggctgttcgtactgcaccgccaccatcgact
cgtgattcaaattggaacgtgcagttggaaactcgtacaaaatccgggaaacggcgaatt
acacccataaacgtggaagtagtagcggaggttgatacggacaacaattcacagccgcct
tggatcagggaaggcgttggattgggtgttgctggaaaagcgaaggggctaattgatgaa
aaaatgacagtagttgacaatgctgaacgatggtcagggttgaattcgactactgttgaa
ccgttggtaccgttggtcgcttcttcttcatcttcggcttttgcatctaagtcgacgtcg
gtaaagttaagaaagggcgacggctttgacgcaggtggaaaaagcatttcgaaatcgtcc
gaagatcacagcggcggtattgtggaagaatttttggaaaaatctaaatcagaattgaaa
tttgacaaaaaaaaatcctggcatcaaaagggcaaaaaagcattgaaacatgcgcaaaga
gaatcgaccatttcacaaactttcccgtcttcggaaactgaggttgaagtggaaactgat
tttcaaactcatcaaacagttgctgtaagcagttcttcaaagcagaaaactcccactcac
cggctggaagcgttgaaagttctgcacctgctgatgtgcagtgttgttgttgacgaggtg
attcggacgggcaaggacggggaggggggtgttgattggggtgagggagggcaatag
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