Trichinella spiralis: Tsp_10252
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Entry
Tsp_10252 CDS
T01609
Name
(RefSeq) putative histone deacetylase family protein
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
tsp03083
Polycomb repressive complex
tsp04213
Longevity regulating pathway - multiple species
tsp04330
Notch signaling pathway
tsp04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_10252
03083 Polycomb repressive complex
Tsp_10252
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
Tsp_10252
04350 TGF-beta signaling pathway
Tsp_10252
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
Tsp_10252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_10252
Enzymes [BR:
tsp01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
Tsp_10252
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
Tsp_10252
HDAC complexes
Sin3A-HDAC complex
Tsp_10252
BRAF-HDAC complex
Tsp_10252
REST complex
Tsp_10252
SHIP complex
Tsp_10252
MiDAC complex
Tsp_10252
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
Tsp_10252
Heterochromatin formation proteins
Other heterochromatin formation proteins
Tsp_10252
Chromatin remodeling factors
NuRD complex
Tsp_10252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
10900994
NCBI-ProteinID:
XP_003372493
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MDGSRKRVAYYYDAEIGCYHYGRGHPMRPFRITLTHNLICSYGLNERMKIYRPLRATADQ
MKQFHSDDYIEFLKSKDGMEELIFTKSMHRYNVGDDCPLFNGMFSFCQISAGGSLACAQK
ITSEEADIVINWGGGLHHARSREASGFCYVNDIVLAILHLLEYYQRVLYIDIDCHHGDGV
EEAFYATNRVLTMSFHKFGEFFPGSGDINDIGADEGRYYAVNVPLRDGITDEYYQQLFEP
IVHMAVQYFQPNVIVMQCGSDSLSGDRLGVLNLTAKGIARHGNCVEYVRSLNIPLMLVGG
GGYTIKNVARCWTYETALAIGAELDNNLPVHEYIGFYAPDFLLHFAPTNIENRNTSTYLE
ETRNTILRNLRLMPVAPSVQMEPYRPRRIPNQINYAELLDLEVATSDERMPLHVADSQVR
HAGEMDVGCKRCDATSAQLLQ
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggacggcagtcgtaaacgtgtcgcttactattacgatgcagaaattggctgttatcat
tatggccgtggacatccaatgaggccgttcagaattacgttgacccataacttaatttgc
agctacggtttaaatgagcgtatgaaaatataccgccctcttcgagctacggctgatcag
atgaagcagttccatagcgatgattacattgaatttttgaagtcgaaggatggaatggag
gaacttatatttactaaatccatgcatcgctacaacgtcggtgacgattgcccacttttc
aacgggatgttcagcttttgtcaaatatctgctggcggttcattggcatgtgctcagaaa
attacatctgaagaagctgacattgttatcaattggggcggtggattgcatcatgctaga
agtcgcgaagcttccggtttttgttatgtcaacgacattgtgcttgcaattcttcattta
ttagaatattaccagcgcgtgttgtatattgacatagattgtcatcatggagacggagta
gaggaagcgttttacgccactaatcgagtgctaacaatgtcatttcataaatttggagaa
ttttttcctggaagcggcgatattaatgatatcggtgcagatgaagggcgttattatgcg
gtgaatgttcctcttcgagatggtattactgatgaatattatcaacaactctttgaacca
attgtccatatggctgtgcagtacttccaaccgaatgtaattgtcatgcagtgcggttca
gattctttgtcgggtgatcggctaggtgttctaaatttaactgccaaaggtatcgcaaga
catgggaattgtgtagaatatgtcagatcattgaatattccactgatgttggttggtggc
ggtggttatacaattaagaatgtggcgcgttgttggacttatgaaacagctttagcgatt
ggtgctgaattggacaacaatctgccagtccatgaatatattgggttttatgcaccggat
tttttgcttcattttgcaccaactaatatagaaaatcgaaatacatctacttatcttgaa
gaaacacgaaacactatactgcgaaacttgcgcttgatgcccgttgctccatccgtgcaa
atggaaccttatcgaccacgacgtattccaaaccaaatcaattatgctgagttgctcgat
ttggaagtggctacaagtgacgaacgaatgcctcttcatgtcgctgattcgcaagttcga
catgctggagaaatggacgtcggctgtaaacgatgcgacgcgacatcagcacaactttta
caatag
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integrated database retrieval system
