Trichinella spiralis: Tsp_10268
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Entry
Tsp_10268 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K05236
coatomer subunit alpha
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsp04131
]
Tsp_10268
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsp04147
]
Tsp_10268
Membrane trafficking [BR:
tsp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
Tsp_10268
Exosome [BR:
tsp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
Tsp_10268
Exosomal proteins of bladder cancer cells
Tsp_10268
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
TPR_COPA_B
Beta-prop_EML
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
NBCH_WD40
TPR_IFT80_172
zf-Tbcl_FmdE
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
10901010
NCBI-ProteinID:
XP_003372509
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MHYSALIRNNFISLAFFDVSHSTFYRITATLHKSGIRIEKRTMLKKFEAKSARVKGLSFH
PVRPWILASLHSGVIQMWDYQLCVLMEKYEEHDGPVRGICFHPQQPLFVSGGDDYKVKVW
NYKQRRCLFNLIGHLDYVRTTFFHNKYPWIISASDDQTIRIWNWQSRSSIAIITGHNHYV
MCAQFHPTDDLIVSGSLDQTVRIWDMSVLRKKNAAPGLHSFDDRIYRPVGQTDLFGQSDV
IVKHVLEGHDRGVNWVTFHPTMCLVASAADDRQIKLWRYNESKAWEVAIHFAVFNLLSNV
VDVCRGHFNNVSCVLFHPRTDLILSDAEDKTIRVWDLQKRTCLMTFRQENSRFWILTAHP
TLNLFAAGHDGGMIVFKIERERPAFTVYEENLFYVRDRILRKLNLRTSNDVPLISLRGKS
HTPYYSLSYNPAEHSVIITTRMPAIENCVYDIYALPKKENTSENTEVEVGEGKRNHGFAA
LWIARNRYAVVDRSRNIIIKDVNHETVKTIELSSCEDIFYAGIGMLLIRDLDGMTLYDVQ
QKRVIATLRVASVRYVVWTSDMSVAALLSKHHITLVTRKLKLLCSTHESNRVKSGSWHNA
EVFIYTTTNHIKYMLANGDNGIIRTLDVPLYVAQVIGGDLICLNREALPKKVSINVNEYM
FKLALIRHQNDTVLQMVRNSNIIGQAIIAYLQKKGYPEIALHFVKDEKTRFGLALQCCNL
DIAFEAAKLLDDRICWEALASAALIQGNHQIVETAYQRVKNFEKLSFLYFITGNVEKLKK
MMKIAEIRKDLCGQFEVALLLGDVRERVRILTANGMQMLAFCTAKTHGLETEAAEIGASI
LSNGQQLPQCSSNAKLLIPPPVIYRNDENWPHLTVSKAQLSKSATEVGKTLEDPLGVVDA
DIVEAGEGWGENEDLLKTPEIGDEEVKEFELEDDGGGWEVDDNIDLPPDLLELSSPTDEE
GGGFVPPARQASTAVRWVVNTRLPMVHVVAGSFESAFQLLRDQIGVVNFKPFRQHFMALY
CRSKLVLECLPVISPLILYPTKDGGNPMDRNTLPPVGLKMSYMATELQACYRLTTAGKFV
DAVEHFHNLLLWIPLMVVDNRQEIREAMHLVEICREYLVGLSLELKRKEMPKEQLKDQIL
SAEMASYFTRCKLQAAHQMLTLRTAVNLLFKLKNYKTCSTMCRRLLECGPKDDVRQQMNQ
ILTFCEKSLTDQHPMEYDALNPFEICAGTYRPIYRGKAMAKCPFCGASYVPNLAGSVCKI
CRVAEIGRDCLGMTISTVEIRSSKRIRLVLKPQRSRRLTMF
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgcattattcagcattaatcagaaataactttatttcgcttgctttttttgacgtgtcg
cacagtaccttttatcgtattactgctacgttgcacaaaagtggaatacgtattgaaaaa
agaacgatgcttaagaagttcgaagcgaaatctgctcgtgtgaaaggactttcttttcac
cctgtgcgtccatggattctggcgagtttgcattccggtgtcattcaaatgtgggattat
caactgtgtgtgttgatggaaaaatatgaagagcacgatggtcctgtaagaggtatatgc
tttcatccgcagcagccactttttgtctctggaggcgatgattacaaagtgaaagtttgg
aattataaacagcgccgttgtctgttcaatcttattggtcatttggactacgtgcgtaca
acgttttttcacaacaaatatccctggataatcagtgcatctgatgatcagaccattcga
atatggaactggcagtctcgcagcagtatcgctataataactggccataatcactacgtg
atgtgcgctcagtttcacccgaccgatgatttgatagttagcggttctttggatcaaacg
gtccgaatttgggatatgtcggttttgaggaagaagaatgccgcacctggtttgcattcg
tttgatgaccgaatctatcgacctgttggacagacggatctgttcggacagtcggacgta
attgttaagcatgttttggaaggtcacgaccggggcgtgaattgggtcacttttcatccc
acgatgtgtttggttgcctctgcagccgatgatcgccaaataaaattatggcgatacaac
gaatccaaagcttgggaggttgcaattcactttgctgttttcaatttattgtccaatgtg
gtggacgtatgccgggggcattttaacaacgtttcttgtgttcttttccatccaagaaca
gatttgattctatctgatgcggaggataaaactattcgagtttgggatttgcagaagcgc
acttgcttgatgacattccggcaggagaacagtcgtttttggattttaacggcgcatccg
acgttgaatttatttgccgccggtcacgacggtggtatgatcgtcttcaagattgaacgt
gaaagacctgcatttactgtttatgaagaaaatctgttttacgttagggatcgcattttg
cggaaattgaaccttcgaactagcaacgacgtacctttgatatcgttgcgtggcaaaagc
cacactccgtattattctttgtcgtataatcctgcggagcacagcgttataattaccact
cgaatgccggccattgaaaattgcgtttatgacatctatgcacttccgaaaaaagaaaat
acttctgaaaatacggaagttgaagtaggtgaaggaaagcgtaatcacggttttgctgcc
ctgtggattgctcgtaatagatatgcagttgtggaccgttcacgcaatattattataaaa
gatgtgaatcatgagacagtgaaaactatagaattgtcatcatgtgaggatatcttctat
gcgggcattggtatgttgctgattcgagatttggatggcatgacactttatgatgtgcaa
cagaagcgagtcattgctacactgagagttgctagtgtgcgttatgtagtttggacatcg
gacatgagtgttgctgctttattaagcaagcatcacattactttggttactagaaaattg
aaacttctctgttctacgcatgaaagcaatcgcgtgaaatcgggatcctggcacaatgcc
gaagttttcatctacaccaccaccaatcatataaagtatatgctagctaacggagataat
ggtattattcgcacactcgatgtaccgctttacgtcgcgcaagttattggaggcgactta
atttgtttgaaccgtgaagcgctgccgaaaaaagtttccatcaatgtcaatgagtacatg
tttaagttggcgttgatcagacatcaaaatgatactgtactgcagatggtacgcaattca
aatataattggtcaggcgattattgcttatttgcaaaagaaaggctatcctgaaattgct
ttgcactttgtcaaagatgagaagactagattcggtttggcgttgcagtgttgcaatttg
gacattgccttcgaggcggccaagcttcttgacgaccgaatctgttgggaagcattggcc
agcgcagcactgatccagggcaaccatcagatcgtagaaacggcatatcagcgtgtgaaa
aattttgaaaaactttcatttttgtattttataactggaaatgttgaaaaactgaagaag
atgatgaaaatagccgaaattcgcaaggacctttgcgggcagtttgaagtggctttgttg
ctcggcgatgtcagagagcgggtgcgaatactcactgcgaatggtatgcaaatgttggct
ttttgtaccgcgaaaacacatggattggaaacagaagcagcagaaattggagcttcgatt
ctatccaatggacaacagcttcctcagtgtagcagtaatgccaagttgctcatcccgccg
ccagtcatttaccgcaatgacgaaaattggcctcatcttactgtcagtaaagcgcagctg
agtaaatcagcaactgaagttggaaagactttagaagatccattaggtgttgttgacgca
gatattgttgaggctggagaaggttggggtgaaaatgaagatttgctgaaaactccggaa
ataggcgacgaggaggtgaaagaatttgaactggaagatgacggtggcggatgggaagtg
gacgataacattgatcttccacctgatttgttggaattgtccagtccgacagatgaagaa
ggcggtggttttgtacctccagctcgtcaggcctctacagcagtacgttgggtggtcaat
acacgccttcctatggtgcacgttgttgctggatcatttgaaagcgcttttcagttactt
cgtgatcagataggcgtggtcaacttcaaaccatttcggcagcattttatggcattgtat
tgtcgatcgaagttggtgcttgaatgtttgccagtcatttcaccgctaattttataccct
acaaaagacggcggaaatccaatggaccgtaatactttaccaccagtcggattgaaaatg
tcctatatggctacggagttgcaggcttgttatcgactgacaacggcaggaaaattcgtc
gatgcagtggaacattttcacaacttgctattgtggataccgttgatggtggtcgacaat
cgtcaagaaattagagaggcgatgcatttggtggaaatttgtcgagaatatttggtcggt
ttgagtttggaactgaaacgtaaagagatgcccaaagagcagctgaaagatcagatattg
tctgctgaaatggcatcttattttactcgttgcaaattgcaagctgcgcatcaaatgttg
actctgcgcacggcggtcaatctgttgtttaagttgaaaaattacaagacttgttcgaca
atgtgccgacgattgctggaatgtggtccaaaagacgatgtgagacagcagatgaatcag
attttgacattctgtgaaaagagtttaacggatcagcacccgatggaatatgatgcgctg
aatccattcgaaatttgcgcaggtacttatcgaccaatttaccgtggaaaagctatggca
aagtgcccgttttgtggtgccagttatgtgccgaacttagcgggaagcgtctgcaaaata
tgccgtgttgcagaaattggaagagattgtcttggaatgacaattagcactgtagagatt
aggagcagtaagcggattagacttgttttgaagccacaaagaagtcgcaggctaacaatg
ttttga
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integrated database retrieval system
