KEGG   Trichinella spiralis: Tsp_10487
Entry
Tsp_10487         CDS       T01609                                 
Name
(RefSeq) hypothetical protein
  KO
K10570  DNA excision repair protein ERCC-8
Organism
tsp  Trichinella spiralis
Pathway
tsp03420  Nucleotide excision repair
tsp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    Tsp_10487
  09124 Replication and repair
   03420 Nucleotide excision repair
    Tsp_10487
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tsp04121]
    Tsp_10487
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_10487
Ubiquitin system [BR:tsp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     Tsp_10487
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      Tsp_10487
SSDB
Motif
Pfam: Beta-prop_EML_2 Beta-prop_RIG_2nd WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_EIPR1 MIOS_WD40
Other DBs
NCBI-GeneID: 10902549
NCBI-ProteinID: XP_003372932
LinkDB
Position
Unknown
AA seq 426 aa
MILFDPIILSTEFTCADFWCLSEFCLPVVERERCSKVVHPFRVTCIRQLSTSSTLFTMMR
EYRNLRESGMMCEANALLQQVETEHLLKMRTTNLLSVDRLTSRLEMDSSEQFFLFAEVTG
IVRIAQMRTGEKNMTIIAEWVPRCVMPRTKITCLRWHPWDHSLFTSVGTDGRLHAWSAAT
MVPVQETELGYKLMYHSICNNPASEPLVAAAYSDRAGIAIVDLRDNIPCFRMAIGEIGIS
SFVEWSPREKDRLLTMSPTGVYVWDMRSFRVPVKKLVPPDDRSKLRGMKISSDGQHLFTL
QGSNRFGLWHLPLMIFVQSTPSQEFSSVIDKTVQFDMFSLVQCDENYAFIPVHDLVHLMC
LRTGNVPVHLHGPINGVDQCIYRRISQQLIICGIDSRPCLCTVPTDLDDLRETPPPQPAP
VIDDDF
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgattctatttgatccaatcattttgtcaactgaatttacatgtgcagatttttggtgc
ttgtcagaattttgcttgcctgttgtcgaaagagaacgttgttcaaaagttgtgcatcca
tttagagtgacttgcattcgacaactttcaacgtcatcgacacttttcacgatgatgcgc
gaatacagaaatctccgggagtccggcatgatgtgcgaggcgaacgccttgttacagcaa
gttgaaacggaacacctgctgaaaatgagaaccaccaatctcttgtcagttgacagactg
accagtagattggagatggattcctcggagcagttctttttatttgccgaagtgaccggt
atagttcgtatagctcaaatgcgtacaggcgagaaaaatatgactattattgcagaatgg
gttccacgctgcgtgatgcctcgtactaaaatcacatgcttgcggtggcatccgtgggac
cacagccttttcacttctgtcggcactgacggcaggttgcacgcctggagtgctgcgacc
atggtgcccgtccaagagactgaactcggctataagttgatgtatcactcgatttgtaac
aatccagcatctgaaccactggttgcagccgcttattccgatagggctggcattgcgatt
gtggatttgcgagacaacataccgtgcttccggatggcaattggcgagataggtatatca
tcgtttgttgaatggtcaccacgggaaaaagatcgcctacttaccatgtccccaacgggt
gtctacgtttgggatatgcgcagtttcagggtaccggtgaagaagctcgttccaccggat
gatcgatccaaactgcgtggtatgaaaatttcgtccgatggtcagcacttgttcacttta
caaggcagcaatcgttttggcctctggcatttgccgttgatgattttcgtccagtcgaca
ccatcgcaagaattttcaagtgtaatcgacaaaacagtccaatttgacatgttttcactg
gtccaatgcgacgaaaattatgccttcattccagttcacgatctcgtccacttgatgtgc
cttcgcactggcaacgttccagtacatttgcatggaccgatcaacggcgttgatcagtgc
atttatcggcgcatcagtcaacaactgatcatctgcggcattgattccaggccctgtttg
tgcactgtaccgaccgatttggatgatcttagagaaactccgcccccacagccagctcct
gtaatagatgatgatttttga

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