KEGG   Trichinella spiralis: Tsp_10891
Entry
Tsp_10891         CDS       T01609                                 
Name
(RefSeq) putative ERCC4 domain protein
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
tsp  Trichinella spiralis
Pathway
tsp03420  Nucleotide excision repair
tsp03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Tsp_10891
   03460 Fanconi anemia pathway
    Tsp_10891
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tsp03032]
    Tsp_10891
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_10891
DNA replication proteins [BR:tsp03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    Tsp_10891
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     Tsp_10891
SSDB
Motif
Pfam: ERCC4
Other DBs
NCBI-GeneID: 10897259
NCBI-ProteinID: XP_003370282
UniProt: E5SY81
LinkDB
Position
Unknown
AA seq 789 aa
MALPINIAHNTFKKTNSDIKKNLFLSKKKLLQLNWNSAVMNKTFSENFLLIAAKGLCVER
LFVRYIELYSDPSVLVIVLGTDAADHTFFSQLLREFGSTEPTRLTSNFSVNERQNAYLAG
GVKFVTTNILINDLLAGRIPVDLLTGILVYRAQTVLKSALDAFVLREIIQRNVKCFVKAF
SDQPSAFAQGIGKLQRAVSLLQVDRVRFLPRFHINVINALDKAAPDLQEVTVNMSDACRV
SERLLNELLTACVQELRQCNTLIPAELLTVEMAATSWFDSAIQNHFGVDLQDILSSKACL
LLKDINRLRHLIDCLESESNRTFASVLTAMFSDKKLFHNNSGWLFTEAAKKLMKEGKKVG
LNTPNKWLALVSIIKDLYVKDSNSESKSAMTFLLVRSRTVGSQLKQLLQELWENDSEKLI
PCRLETDLVNVLGCERDPMILILHTKEKYTIFRALLSLNPDNVVIYNADMWIVRHLELYN
ATACSREKQLRVFFMMYDKSMEERKYLSGLQRERTSFEQLFKEEVSLLIPKRTSLDQTRL
NELEDQKVPSTIVVDMREFRSELPTQLHVRGVRLVPVTLTVGDYIITPDVCVERKSINDL
ISSLIHGRLYAQCRAMNNYYKKQILLVQLGDSKKGWHRIGDQLAARLACLTLNFPKLSII
WAMNALSAAELLIDFKWKRNEPNANEAVAFGKEEIPEEQLKQGQTVEVLRRLPSVDSKNI
GTFLKASVNLKQLFTSSQEELEKIVGNQLAAKDLYIILRNLNFVMISVETLTNFQQQLCN
SAMTEKTQN
NT seq 2370 nt   +upstreamnt  +downstreamnt
atggcattacctatcaatatcgcccacaatacctttaagaaaacaaactctgatattaaa
aaaaatttatttttatcaaagaaaaaattgttacagttaaattggaattcagcagttatg
aacaagactttttctgaaaattttttactcattgctgcgaaaggtttgtgtgtggaacgt
ctctttgtccgctacattgaattgtattcggatccgtcagttttggttattgttcttggc
actgatgcagcagatcacactttttttagtcagctattacgagaatttggctcaaccgaa
ccgacaagactgactagtaattttagtgtaaatgaacgacagaatgcatatttggcaggt
ggtgtgaaattcgtgactaccaatatacttatcaatgatctcctcgccggtcgtattcct
gttgatttgctaacaggtattctggtgtaccgtgctcagacagtgcttaaatctgccttg
gatgcatttgtactacgtgaaattatccaaagaaatgtgaaatgttttgtcaaagctttc
agcgatcaaccaagcgcttttgcccagggcattggtaaattgcaacgtgctgtttcgtta
ttacaagtggatcgcgtacgctttcttccacgttttcacattaatgttataaatgcgctg
gataaggcagcaccagatttacaagaagtgacagtcaacatgtccgatgcttgcagagtt
tccgaacggcttctcaacgaattactcacagcatgtgtgcaagaattgcgtcaatgcaat
actttaataccagctgaattactgactgttgagatggctgcaacttcatggtttgattcg
gctattcaaaatcattttggagtagatcttcaagatattttgtcttctaaagcgtgcctt
ctactcaaagatattaatcgactgaggcatttaattgattgtttggagtctgaaagtaat
cgcacgtttgcttctgtgttgacggccatgttttcggataagaaactttttcacaacaac
agcggttggttgtttactgaagccgcaaagaagctaatgaaagaagggaaaaaagtcggt
ttgaacacaccgaataaatggcttgcgttggtttcgattattaaagatctatacgtaaaa
gacagcaacagtgaaagtaaatcagcgatgacatttttacttgtgagaagtcggactgtc
ggttcgcagttgaagcaattgttgcaagagttgtgggaaaatgattcagaaaaattaatt
ccatgcagattagaaactgatttagtaaatgtactcggctgtgaaagggatccgatgata
ttaattttacacacgaaggaaaagtatacaatatttcgagctttgctgagcttgaatcct
gataatgtggtcatttacaatgccgacatgtggatagtgcgacatttggaattgtacaat
gctacagcttgcagtcgtgagaaacagttgcgggttttcttcatgatgtatgacaagtca
atggaagagcggaagtatttgagtggtttgcagcgggaacgaactagctttgaacaactt
ttcaaagaagaagtgtcgctgttgattccgaaacgcacttctctggatcaaacccgtttg
aatgaacttgaagatcaaaaagtaccgtcaaccatagtagttgacatgcgagaatttcgc
agtgaattgccaactcagcttcatgtcagaggtgtacggctcgttccagttacgcttact
gttggcgattacatcatcacgccggatgtatgcgttgaaaggaaatcgatcaatgatttg
atcagctctttaatacatggtcgtttgtacgcacagtgtcgagcaatgaataattattac
aaaaaacaaatattgctagtacaactgggtgacagtaagaaaggctggcatcgaattggg
gaccaactggctgctagattggcttgtttgacgctgaattttccaaagttgagcatcatt
tgggcaatgaatgctttgtcggccgcggaattgttgatcgatttcaaatggaaacgcaac
gagccaaatgcaaatgaggccgttgcatttggcaaagaggaaattcccgaagaacagctg
aagcaaggtcagactgttgaagtcctgagacgccttccaagcgtggacagcaagaatatt
ggtactttcttgaaagcatcagttaacctgaagcagctttttacgtcatctcaagaggaa
ttggaaaaaattgttggtaatcaattggcagcgaaagatctgtacattattttacgaaat
ctcaatttcgtgatgatttcggttgagacgttgacaaatttccagcagcaactctgtaac
agcgcaatgacggaaaagacccagaattga

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