KEGG   Trichinella spiralis: Tsp_10938
Entry
Tsp_10938         CDS       T01609                                 
Name
(RefSeq) WD domain, G-beta repeat-containing domain protein
  KO
K15361  WD repeat-containing protein 48
Organism
tsp  Trichinella spiralis
Pathway
tsp03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    Tsp_10938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_10938
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     Tsp_10938
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz DUF3337 Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_SPT8 WD_LRWD1 WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 10903399
NCBI-ProteinID: XP_003380961
LinkDB
Position
Unknown
AA seq 1024 aa
MAILKILFAFVRSPNGIYAITSAEDCRLRLFQLSSYNSDFHNEHSNDDSKAKSPTLSLLK
RISCGDCIYDFCWSPVCSASGSVERATLFAYTCRHDPIFLKDCTGETRAAFKAINDKRDL
DVRLLQSQRGVWLTKETGGQQGLISCFTMPSDANGIFFAGSYDGTVALYDNRLKEPQVVF
VANQRGITHMMMTSSGYYLFTGGRCDCEICCWDVRIMPKKMKVLKRPADTPQRIYFDIDH
FDKFIISGSSTGHVIIWNLDEFNANNCFDHCSILKHTLTFRASSSLINGISLNPLHPFLL
TSSGFRIPPLIDMNTNVPDEIVTKYFKSDNALNMWPFREEFAFSMLEFSAAFIISYVIRD
EVEPRHRSGVNSMQFDSSLQRLYTAGRDSVIRIWNSRLDRSYYLVVKIHILVLWNIIRTG
LMMYCCVATEGTVSADVNRLHDTYKIISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALA
YAKDKEQVASAGLDRSIFLWDVNTLTALTASNNTITTSSLNGSKDSIYSLAMNPSGTVIV
SGSAEKVLRVWDPRTCQKSMKLRGHTDVVKAIVISRDGTHCVSAGSDASIRLWHLGMQRS
IGTIWCHTEGVWSLQTDDSFSTVYSAGRDKCVFMSNLKCTENSVLLFEEQAPVLKLLLVD
HGNSIWSSTTDSSVRLWKISAESLDNDYDVDGCNADMPLVRKPEYVIKGAPSIRQYSILN
DKRFILTRDSEDNIALWDVLRARKAKDFGCQNFEQKLKEQFKMLFVPNWFSVDLKTGMLQ
ITLDEADCFSAWVSAKDAKLGNINNVDVKLNFGGLLLQALLEHWPRAQSVQDQPEEGTGF
DKRFSNGYFAVPGHTPLIFWCTSGRALFRLACRDAGGENESALLNDVLPQWAVDIVVNKA
MPNDRLSASDMLQVRKVIEHVYEKILSTAVSTENSMNANSEKSPGAQSQPSSTPAVLPSN
LEEKIELYCQDQRLDPNMDLRTIKYFIWKQGGDLLSVMFAKTKAFKLTTCSENYLKTLDI
NRVH
NT seq 3075 nt   +upstreamnt  +downstreamnt
atggccattttgaaaatattattcgcatttgtcaggtcaccgaatggtatttatgcaatt
acaagtgccgaggattgccggttgcgtttgtttcaactatcgtcgtataattctgatttt
cataatgaacactccaacgatgatagtaaagcgaaatcaccaacattgtctttgttgaag
cgaatttcttgcggtgattgtatttatgatttttgttggtcacccgtatgttcagctagt
ggtagcgttgaacgtgcaactttatttgcatatacctgtcgtcacgatcctatttttttg
aaagattgcaccggagaaactcgagcagcattcaaagcaataaatgataagagagacctg
gatgtcagacttcttcaatcgcaacgtggtgtatggctaactaaagaaaccggtggacag
cagggattgatttcatgcttcacgatgccttcggatgctaatggtattttctttgccggc
tcatacgatggaaccgtggctttgtatgacaaccgattgaaagaaccgcaagttgttttc
gtagcaaatcaacgtggcattacacatatgatgatgacatcatcgggatattatttattt
actggcggccgttgtgattgtgaaatttgctgctgggacgtgcgtatcatgccgaaaaaa
atgaaagttctcaaacgacctgccgatactccacagcgtatttatttcgatattgatcac
tttgacaaattcatcatatcaggaagttctactggccatgtaattatttggaatttggat
gaatttaatgcaaacaactgttttgatcactgttcgattttgaagcacactttgactttt
cgtgcatcctcttcgcttataaacggtatcagcctaaatccgttgcatccatttttactg
acgtcttcgggatttcgtattccaccgctcattgatatgaataccaatgtacccgatgaa
attgttacgaaatatttcaaatctgataatgcgttgaatatgtggccttttagggaagaa
tttgcattttcaatgctggaattttctgctgcctttattatttcgtatgtgattagagat
gaagtggaacctcgacataggtctggggttaattctatgcaatttgattcctctctacaa
aggctatacacagccggccgagattcagttattcgaatttggaacagtagacttgatagg
agttattatttagtcgttaagatccatatattggttctatggaacatcatacggactggg
ttaatgatgtattgctgtgttgcaacggaaggcactgtaagtgctgacgtgaatagattg
catgatacgtataagataatttcggcttcaagtgacacgacagttaaagtttggaatgct
cacaaagggttttgtatgtcaacattacgtactcacaaagattatgttaaagcgttggca
tatgcgaaagataaagaacaagttgcgtcggccggtttagatcgtagtatctttctttgg
gatgttaatacattgactgcattgacagcctccaataatacaattacaacttcatcgttg
aatggcagcaaggacagtatatattcacttgcgatgaatccaagtggtacagtgattgtt
tctggttcagcggaaaaagttttaagagtttgggatcctcgtacttgtcaaaagtcaatg
aaacttcgcggtcatacagatgtggtaaaagcaattgtaattagtcgtgacggaacgcac
tgtgtatcggctggttcggatgcaagcattcgcttatggcatttggggatgcaacgatca
attggaacaatttggtgccatacagagggtgtttggtctttgcaaactgacgattcattc
agtactgtttattctgcagggagggataaatgcgtttttatgtccaatttgaaatgtacc
gaaaattctgttttactgtttgaagagcaagcaccagttttgaaattgctgttagtcgac
catggaaattctatctggtcgtctaccactgattccagcgttcgattatggaaaatctcc
gctgaaagtttggacaatgattacgatgttgacggatgcaatgcagatatgccacttgtt
aggaaacctgaatatgtaataaaaggtgctccaagtattcgtcaatacagcatattaaat
gataaacgatttattttgacaagagattcggaagacaatattgcactgtgggacgtgctt
cgggctagaaaagctaaagactttggttgtcagaattttgagcaaaaattgaaagagcaa
ttcaaaatgctcttcgtaccgaattggttttccgttgatttgaaaaccggaatgctacaa
attacattagatgaagcggattgtttttcagcatgggtgtcggcaaaagatgctaaacta
ggcaacatcaacaatgttgacgtgaaattaaattttggtggtttacttttacaagctctt
ctagagcactggccacgagcacagtctgttcaagatcaaccagaagaaggaacaggattt
gacaagcgttttagcaatggttactttgctgttcctggtcatacaccactaatattttgg
tgtacgtcgggcagggcactgtttcgattagcttgtcgtgatgccggtggtgaaaatgaa
agtgcactgttgaacgacgtgctaccccaatgggctgtagatattgtagtgaacaaagca
atgccgaatgatcgactcagtgcttctgacatgttgcaagtgcgtaaagttattgagcat
gtttatgaaaaaatcttgtcaactgctgtcagtactgaaaatagcatgaatgctaacagt
gaaaaaagccccggtgcacaaagtcaaccttcttcaacgcctgcagtattgccttccaat
ttggaagagaaaattgaactttactgtcaagatcagaggttagatcccaatatggatctt
agaacaatcaagtatttcatctggaagcaaggtggtgaccttctttcagttatgtttgct
aaaacaaaggcatttaagttgacgacatgtagtgaaaattatctgaaaacgttagacatt
aatagagttcattaa

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