Trichinella spiralis: Tsp_11100
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Entry
Tsp_11100 CDS
T01609
Name
(RefSeq) putative RNA recognition motif protein
KO
K13159
heterogeneous nuclear ribonucleoprotein L
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_11100
Spliceosome [BR:
tsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
hnRNP proteins
Tsp_11100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_10
RRM_8
DUF4523
Motif
Other DBs
NCBI-GeneID:
10902319
NCBI-ProteinID:
XP_003381998
LinkDB
All DBs
Position
Unknown
AA seq
820 aa
AA seq
DB search
MKPFNAISTFGSTLKNNVVNSAKIALRKLVANDGYMASMHDQYGAQNPPSRVLLVRNLMD
NVVEADLVDALSPFGLVSYVSLTSRGSALVEFESITAAERCVTFNAVSDQLETEAPSNVL
IIYVQNAKYPITTEVIHQICKPIGFVNRIIINRRDGIQALVEFRDIETARVAKQRLNGCD
IYSGCCTVKIEFAKVQFLDSYKQTTRTCKAYTPNVPVTNAQKVFPQSTILHTTCRTKITC
LLLTDRTNYAQQSTYTKLFHRQNNDGSTLSQIKLTIHIKVQQGFTPIISVRSWNQKEITS
LITTFITTRSKTGFHFCTVRVICSTMCTHRGFSIDSDLWNRFSKLHHLTVKKNEPDQVDY
TGEMEAMPPPAAYGRPMFDMENASPFKADQLASAAAFNRPPYDPEAMLVLKGVTKKLLPG
AGAYSRSPYDSDPTMRPNPFGDRQPDFRDAPYPKQAYYPNRRGGDGYCLPEDMSPRPGRG
YYDDFRGPPDPKMGSYPGYGDVDGAYRGTYDDRMKDDFGMHQESTVIMIYGLDPTSVNCD
KLFNLLCLYGNVIRIKFLKSKNDTVMVQMGEPIAAGRVIENLHNALVFGKRIHVAMSRQR
QLNEVRDPTEMPDGSSSYKDFTGSRFQRFTSPDIAAKNRITNPQKYLYFFNAPPNVTEER
LISLFKDSNAPEPTNVKIFNKKELVKNSAGIIEFENEAAATEALMLCNHTNIESYGSKSP
FVLKMCFAGPAHTSVSVVGGGGSYRGRGEIGRFNGPASPPNPRPRGPSSRYGGPPPRGYA
RENSRGSWGYGNRGARGVYKASAHRSKWRKKGSLDQNLNI
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccattcaatgcaatttcaacatttggctcaactctgaaaaataatgttgtcaat
tcagctaaaatagcattgcgaaaactagttgcgaatgatggatacatggcatccatgcac
gatcaatatggggcgcagaatccaccaagcagagtactgctcgtcagaaatttaatggat
aatgttgttgaagcagatttggttgatgcattgtctccatttgggcttgtcagttacgtg
agccttaccagtcgtggttccgctttggttgaatttgaaagtattactgcggccgaacgt
tgcgttacatttaatgctgtaagcgatcagcttgaaacagaagcgcctagtaatgtgttg
ataatttacgttcagaatgcgaagtatccaattactacagaggtaatacaccaaatttgc
aaaccgattggctttgtgaatcgtataattattaatcgtcgggatggtatacaagcattg
gttgaatttcgagatattgaaacggccagggtggccaaacaaagattgaatggatgcgac
atttattcgggctgttgcactgtgaagattgaatttgcgaaagtacaatttcttgattca
tataaacaaacaacaagaacttgtaaggcgtataccccaaacgtccccgtaaccaatgcc
cagaaagtatttccacagtccactattttacataccacttgtcgcacgaaaataacctgt
ttactgctcacagatagaacaaattacgcacagcagtcaacatatacaaaactttttcat
cggcaaaacaacgatggttcaacgttaagtcaaatcaaattaacaattcacatcaaagtg
caacaaggattcacacccatcatatcagtaagatcgtggaatcaaaaagaaattacaagc
ttgataacaacatttatcaccacaagatcaaaaactggatttcacttttgcactgtgaga
gtgatctgttcaacgatgtgtacgcaccgtggctttagtattgattcagatttatggaat
cgattttcgaagctgcaccacttaactgtaaaaaagaatgagcctgatcaagtggattac
accggagagatggaggctatgcctccaccagcagcttacggtcgtccaatgtttgatatg
gagaacgcatctccttttaaagcggatcagttagcttcagcagccgctttcaaccgcccc
ccttacgatcctgaagcgatgttagttcttaaaggcgtcacaaagaaactgctgcctggt
gcaggggcttacagtagatctccatacgacagcgatccaacaatgcgaccgaatccattt
ggcgatcgtcagccagattttcgtgatgctccttatccgaagcaagcttactatccaaat
cgaagaggtggtgatggctactgccttcctgaggatatgagcccaagaccagggcgaggt
tattacgatgatttccgcggcccaccagatccgaaaatgggctcttatccaggctacggc
gacgtggacggtgcataccgtggaacttacgacgatcgcatgaaggacgacttcggtatg
caccaggagagtactgttatcatgatctatgggttggatccaacatcagttaattgcgac
aagctgttcaatttgttatgcttgtatggaaatgtaattcgaatcaaattcttgaagagc
aaaaatgataccgtcatggtgcaaatgggagaaccgattgctgctggtcgtgtcatagaa
aacttacacaatgcattggtatttggcaaacgcattcatgtggcaatgtcacgccaacgc
cagctgaatgaagttcgagatccgaccgaaatgccagacggtagttcatcttacaaggat
tttactggcagtcggtttcaacgatttacatcgccggatattgcggccaagaatcgtatc
accaatccgcagaagtatttgtactttttcaacgcgccgccaaatgtgaccgaagagcga
ttgattagccttttcaaagattccaacgctccagagccgacgaatgtgaaaatttttaat
aagaaagagcttgtgaaaaattccgcgggaataattgaatttgaaaacgaagctgccgct
acagaagcattgatgttatgcaatcatacgaatatagaaagttatgggagtaaaagcccg
tttgtgctgaaaatgtgtttcgctggacccgcgcatacgtcggtcagcgtcgtaggtggc
ggcggcagctacagagggcgtggtgaaataggccgtttcaatggacctgccagtccgccg
aatcctcggccaaggggcccttcgagccgctatggtggtcctcctccacgtggctatgca
cgtgaaaattctcgaggaagctggggttacggaaaccgcggtgcacgtggagtttacaaa
gcttcggctcatagatcaaagtggagaaagaaaggatcgcttgatcagaatttgaatatt
taa
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