KEGG   Trichinella spiralis: Tsp_11235
Entry
Tsp_11235         CDS       T01609                                 
Name
(RefSeq) putative DEAD/DEAH box helicase
  KO
K19178  POLQ-like helicase [EC:5.6.2.4]
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_11235
Enzymes [BR:tsp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Tsp_11235
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   Helicases
    Tsp_11235
SSDB
Motif
Pfam: POLQ_helical DEAD HTH_61 ResIII Helicase_C HHH_5 AAA DUF4332
Other DBs
NCBI-GeneID: 10897426
NCBI-ProteinID: XP_003369944
LinkDB
Position
Unknown
AA seq 923 aa
MAATSTATNQANEPLLRIALQRYQTNLDFLTAVMHNSVCDDFSSLGMKSDGVIEEFDDSF
FIDSVPVFTSVISSENSELDPPDEKRTCSFQSQLYQRFQANAVRPQSEEEAIYGLPSNLI
EALKKHRGISSLYDWQKAVLSHPSIVSGRNLIITLPTGGGKTLLAEILILKQLLCQQKDA
LFVLPYVSIVQEKVKGLLPLGLDLEFLVEEYASNKGRIPPIKRRRKKSVYVSTIEKAQAL
VNSLFESKKIGNLGLVIVDELHLIGVGGNRGAALEQLISKLLYCAQNCQLIGISATLSNL
EDLTTFLKADLFTANFRPVSLTEYVKVENILYKVNSNINCRDSLLEFYRHLPTAVQILSA
FIDKYLKLTQKSRDPDNLSFLVNEVIPSASCLVFCPTKKSAENVCIMLSQTLPSELTDHK
SKEKRKLLEDMLEECGRKLCSIQKRCIPYGLAYHHSGLTTDERRLIQDAFLEGTLCVLCC
TSTLAAGVNLPAKRVILRSLTIGNRPIMKQEYTQMTGRAGRAGLDDSGESVTVIQRNQKD
QLEELLTNVTEQCRSSLMDDNGRGLKNLLLSIIGLEMICSKADLIAFFKKTLFYIQFKNS
SEISPTDLFEDSLRYLVNEGFILINRKNKTTFSSDSIVVQITNFGKAVCKSGIDIQISKQ
VYSDLTIASQSMMLTTRLHLIYCSIPYTNQEELNISWDAFYNEYNKLDKCEMKMLEAFGI
DMCYIIKRKQGIAASKDLLNLSTLNRVYAALILRQIWNQHNLWDVAAAFAVSRGYIQHLI
QSAASFASSLLRFCEQMEDLWALKSLLSDFSRALAYCVRAELVPLMEIQGVQKMTVLLQA
RALQLYNAGFTTVASVARSDVLTLISSVDHLSMKQAAQMISSAKMILNEKVEALMEQAEE
VLGKQDSSDVSVDEIVSTLRESV
NT seq 2772 nt   +upstreamnt  +downstreamnt
atggcggcaacaagcacagcgacaaaccaagcaaatgaaccactgctaagaatcgcactc
caacgataccaaacgaatttagattttctgacagctgtaatgcataattctgtgtgtgat
gacttttcaagcttggggatgaaatcagacggcgttattgaggaatttgatgactccttt
ttcattgactctgttccagtttttacatctgttatttcatctgaaaattctgaattggat
cctccagatgaaaagaggacatgcagttttcaaagtcaactttatcaacgttttcaagca
aacgctgtgcgacctcagtctgaagaagaagctatatatggcttgccttcaaatttgatc
gaagctttgaaaaagcatcgtggtatttcttccctgtacgattggcaaaaagctgtttta
tctcatccgagcattgtttctggtcgaaatttgataattaccttaccaaccggcggaggg
aagacattattggctgaaattttaattttgaagcagctactttgtcagcagaaagatgca
ttatttgttttgccatatgtctctatagttcaggaaaaagtaaaaggtctattgccgctc
ggcttggatttagagtttttggtagaagagtatgcatccaacaaggggcgcattccgcca
attaaaaggcgaagaaaaaaatccgtttacgtgtcgactattgaaaaggcgcaggcatta
gttaacagtttgtttgaatccaaaaaaattggaaatttaggtttggtaattgtcgatgaa
cttcatcttattggtgtaggaggaaatcgcggagccgctttggaacaactcatttccaaa
ctactctattgtgctcaaaattgccagttgattggaattagtgccacacttagcaatttg
gaagatcttacaacgtttttgaaagctgatttatttacggctaacttcagaccagtcagc
cttacagaatatgtaaaagtagaaaatattttgtataaagtgaattccaacatcaactgt
cgtgatagtttattagagttttatcgtcatttacctacagcggtgcaaattttatcagct
ttcattgataaatatttaaaactaactcaaaaatctagggatccagataatttgtcattt
ttggtcaatgaagttattccttcggcttcttgtcttgttttttgtccgacaaagaagagt
gctgaaaatgtttgtatcatgctttcccagactttacccagtgagctaactgaccacaag
agcaaagagaaacgtaagctgcttgaagatatgcttgaggaatgtggtagaaaattgtgc
agcattcaaaagcgatgtataccttatggtttggcttatcatcattctggtttgactacg
gacgagcgccgattgattcaagatgcattccttgaaggcactctttgcgtactttgttgt
acgtcgactcttgctgccggtgtcaatcttccagcgaaaagggtcattcttcgaagttta
actattggcaatagaccaataatgaaacaagagtacacacagatgactggacgtgccggt
cgtgctggcttggacgattcaggggaaagtgttactgtcatacaacggaatcagaaggat
cagttggaagaactgttgaccaacgttacagagcaatgtcgcagtagtttgatggacgac
aatggacgcggattaaaaaatttacttctcagcatcattggtttagagatgatttgctca
aaagcagatttgattgcttttttcaagaagacgttgttttatattcaattcaaaaattca
tctgaaatttcaccaacagatttgtttgaagattcactgcgatatttagtcaatgaagga
tttattttgattaatagaaaaaataaaaccaccttttcatcggattcaatcgtggtgcag
attaccaattttggcaaagctgtttgtaaaagtggtattgatattcaaatttcaaagcaa
gtttattccgatttgacaatagctagccagtctatgatgctaacaacgcgcttgcattta
atttactgttcaataccttacacaaatcaagaagaacttaatatttcatgggatgcgttt
tacaacgaatataacaaattagataaatgtgaaatgaaaatgctcgaagcatttggaatt
gacatgtgttacattataaagcgcaagcaaggaattgcggcttcgaaagatttattgaat
ttgtcgacattgaatagagtttatgcggccttgattcttcgacaaatttggaatcaacat
aatttatgggatgtagccgctgctttcgcagtttcacgaggctacattcagcatcttatc
caatctgctgccagttttgcatcaagtctattacgtttttgtgaacaaatggaagatttg
tgggctttgaaaagtttgctgagtgatttctcccgtgcgttggcatattgtgtccgggct
gaacttgttccgctgatggaaattcaaggagttcaaaaaatgactgttctgcttcaggct
cgagctttacaattgtacaatgctggtttcactactgtagcttctgttgctcgttcagac
gttttgacactcattagttctgtggaccatttgtcaatgaaacaggcagctcaaatgatc
agcagcgctaaaatgattttgaatgaaaaagtggaagcattgatggagcaagctgaagag
gtgctcggcaagcaggactcgtctgatgtaagcgttgatgaaattgtttctacccttcgt
gaatcagtttaa

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