KEGG   Trichinella spiralis: Tsp_11412
Entry
Tsp_11412         CDS       T01609                                 
Name
(RefSeq) histone deacetylase Rpd3 protein
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tsp  Trichinella spiralis
Pathway
tsp03082  ATP-dependent chromatin remodeling
tsp03083  Polycomb repressive complex
tsp04213  Longevity regulating pathway - multiple species
tsp04330  Notch signaling pathway
tsp04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Tsp_11412
   03083 Polycomb repressive complex
    Tsp_11412
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    Tsp_11412
   04350 TGF-beta signaling pathway
    Tsp_11412
 09150 Organismal Systems
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    Tsp_11412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_11412
Enzymes [BR:tsp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     Tsp_11412
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     Tsp_11412
   HDAC complexes
    Sin3A-HDAC complex
     Tsp_11412
    BRAF-HDAC complex
     Tsp_11412
    REST complex
     Tsp_11412
    SHIP complex
     Tsp_11412
    MiDAC complex
     Tsp_11412
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     Tsp_11412
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    Tsp_11412
  Chromatin remodeling factors
   NuRD complex
    Tsp_11412
SSDB
Motif
Pfam: Hist_deacetyl OST_IS
Other DBs
NCBI-GeneID: 10901174
NCBI-ProteinID: XP_003372672
LinkDB
Position
Unknown
AA seq 459 aa
MFAPCLPLIIARKFATITTVSEVGNFYYGQGHPMKPQRIRMANNLILNYGLYRHMEIYKP
TWATVDEIRQFHSEDYITFLESVHPENLMDYNKHMQRFNVGEDCPVFEASACKLNRRACD
IAINWAGGLHHAKKYEASGFCYVNDIVLAILSLLRHHQRILYVDIDCHHGDGVEEAFFTS
DRVMTVSFHKYGEYFPGTGDLKDVGAGRGKYYAVNFPLRDGITDDSYRSIFEPVITKVME
SFQPSLIVMQCGADSLTGDRLGCLNLTVKGTVVKGHGRCVDFIRRQNLPMLMLGGGGYTV
RNVARCWTYETSVAIGTEISNDLPYNDYFEYFGPDFKLHIPPSAITDQNSKEYLQDIQMK
LFENLRMLPCAPSAPIMPIPDDPLSHVKTEEDEEMKHADERLPASLCDKMIEQEGDFYTD
ESKGDAEEIDTTNMVLENLQQRSSDPLQSPPQKVKKEEN
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgtttgcgccatgcctgcctctgattatcgcaagaaaatttgctactattacgacagta
agcgaagtcggcaacttttactatggccaaggacatccgatgaagccgcaacgcatcaga
atggctaacaatttaattctgaattatggtctgtatcgtcacatggaaatttacaaaccg
acatgggccaccgttgatgaaattcgacaattccatagtgaagattacattacatttttg
gagagtgttcatccggaaaatttgatggactacaacaagcacatgcaacgcttcaacgtt
ggggaagactgtccagtttttgaggcaagtgcgtgcaaattgaatcgcagagcttgtgat
attgcaattaactgggctggaggacttcaccatgcgaaaaaatacgaagcatccggattt
tgttatgtgaacgacattgttctcgcaattttgagtttattgcgtcatcatcagcgtatt
ttgtacgtggatattgattgccatcatggggatggcgttgaagaagcgttttttacatct
gatcgcgtcatgacagtttcttttcacaaatacggagaatattttccaggaactggcgat
ttaaaggatgttggagcaggacgtggaaaatattatgctgtaaattttccacttcgtgat
ggcattactgacgactcatatcgcagcatatttgagccagtaatcactaaagttatggaa
tctttccagccaagcttgattgtgatgcaatgcggcgcagattctctgacaggcgatcga
ttaggttgtctgaatttgaccgtcaaaggtacagtggtaaagggacatggtcgatgtgtg
gatttcattcgaagacagaatttgccaatgctaatgcttggcggcggcggctacacagta
cgcaatgtcgctcgttgctggacttatgaaacgtccgtagcaattggcacagaaattagc
aatgatttaccctacaatgactactttgaatattttggtcctgatttcaagttgcacatt
ccaccgtcagctataactgatcaaaattcaaaggaatatttgcaagacatacagatgaag
cttttcgaaaatttgcgtatgctgccttgcgcaccgtcggcgccaataatgccaatacct
gatgatccattaagtcacgtgaaaactgaagaagatgaagaaatgaagcatgccgacgaa
cggcttccagctagcttatgtgataaaatgatagaacaagaaggtgacttttacaccgac
gaaagcaaaggcgatgcggaagaaattgatactactaacatggtattagaaaatctgcag
cagcgttcgtcagatccattgcagtctccgccacaaaaagtgaagaaagaagagaactga

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