Trichinella spiralis: Tsp_11538
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Entry
Tsp_11538 CDS
T01609
Name
(RefSeq) putative SNF2 family N- domain protein
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
10902037
NCBI-ProteinID:
XP_003373126
LinkDB
All DBs
Position
Unknown
AA seq
1667 aa
AA seq
DB search
MLVNNNNIIIVVDVADMGGISSSASSDKESNDSDVDDDADSVENTTEVVGVPETSSWTEV
MFLSSSERMMNSSRIFTNNAALKLSTETKENSISKPRVGKVKTLLEEQSELDGNKAAGES
NAAGNIYDTDRNVSTSSKKQVEEEKAESSTSPFTADEEETVTELDDYTQSNETSSWINYQ
KLQSENVEERREGLAHIAEEVERLQPKGYTLETTTVNTRIPFLLKFSLREYQHVGLDWLV
MLDSRGLNGILADEMGLGKTIQTIALLAHHACQNNIWGPHLIIVPTTVILNWEMEFKKWC
PAFKIFTYYGSTKERKEKRKGWNRPNAFHVCITSYKLVIRDYSTFRRKAWQYMILDEAQH
IKNYKSERWQMLLHFRARRRLLLTGTPLQNSVMELWSLMHFLMPDIFCSDKDFREWFSNP
LTGMVEGTMEFNDQVIKRLHHVLRPFLLRRLKSEVETQLPKKYEHLIKCSLSKRQRYLYD
EFMSRSNTKAQLATGSIFNIISVLMQLRKVCNHPNLFEQRPVMSPLVLDPIIYRPPSLVC
DLPSKCNLEILPLRLNVLQQEFSSGFACNCSGKLFSTKFEQPCKIESLPQISELPVGLFN
FKSLFLDNRNTTALLDNSRAVVKENSNMKDSSDQKLTAVIPLKKRCSTSNGVVVSRPASV
DVSPKGAGSSVKSEEKPKVIYWRLNPIGGVNASGGRVGTTRVLRPIYTATTSRMPRPALA
SRGPCAAGPSLVRLVRPSFGAVATRAPAVAATPAASQQCRSPATVQSYHGGALRPRLGTT
SRPPMACRQSFLQQMVRPNGGSPTKPLSARAFLDYRLQTAGAVEASGRTTTGMIHVRLPG
SNPTSFSGQSSALSTASSLRVGAGAKVNIRCSVPNQNILMPRGALIQLHAGKLCIPIRPV
PPPASTASNSSSSGTAVVENVQLKKTPMAALPSSTTYERGRRKQQQQLQPQPQQRQQPTG
QQRQISSEESPAFLSPVENCNRRVTRRRKATSQVESSSFADSPDDDFNVAAESKKIALRS
GATVGSGSKRRRSAAVVASTSSRSDSSKLRRSTRSSFKAAVEKNSNIFAPSTHSDDHHYN
NEDEGEELPSRSGDVERMDGTSTQGTVSFDPEAETSLEKAILKLLNKQVNDLWSEITLSK
AETKLRIQNNLINQNRERCLARPMYGSDLRMAFTIEKRSVPLSRTLEDIFQSVRFLLQQF
LVYVPAALISEPLFRPTYRSCAVEYAEVAMRTSMNRLLKNKLDVFRAVEYAQRLCFPELR
LIEYDCGKLQSLSALLRRLQAEGHRCLIFTQMARMLDILEAFLSYHGYMYLRLDGATNIE
RRQMLMERFNHDKKILCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIG
QTRDVHIYRLICERTIEENILLKATQKRKLGELAIDEGGFKADFFHNTNIKELFDMEESV
FVRDVSDADIQQAMSKVEDDNDAIAARIAVDEAQAEERADEEEDDENATSGQKKSDAVQN
ANDNSVAESSDPDVLRVLEEMKDVLSKMSEVERYALEYIEEERAFEFSEELKGVDNEIEE
RKMALMQAHYSEMRSARAMQEAEAGEEFAITYDRRDAFAKVRDGDFNGESVKNSGKVSLL
LTKEEGVTSVVAKSSTSSSVPATKCSLSNEKFPIRTRRTRNNNSTVD
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgctggttaataataataatataattattgttgttgatgttgcagatatgggtggtatc
agttcgagtgcatcgtctgataaggagtcgaacgacagtgatgttgacgatgatgcggat
agcgtggaaaatacgaccgaagttgtaggagtcccagaaacttcttcgtggacggaagta
atgtttttgtcatcaagcgaacgaatgatgaattcgagtcgaattttcaccaataatgct
gcattgaaattgtcaacggagacaaaagaaaattctatttcaaaaccgagggttggcaaa
gttaaaacactgctagaagaacaatcagaattggatggcaataaagcagcaggcgaatcg
aatgcagctggaaatatttatgatacggatagaaacgtttcaacatcttctaaaaagcaa
gtagaagaagaaaaggcggaatcgtcaacatcaccatttacagctgatgaagaagaaact
gtaactgaacttgacgattatacacaatcaaacgaaacttccagttggatcaattatcag
aagcttcagtctgaaaatgttgaagaaaggcgggaaggtctggcgcatattgcagaagaa
gtcgaacgattgcaaccgaaaggctacaccttagaaacgacaaccgtgaatactcgaatt
ccatttttacttaaattttctctcagagaataccaacacgttggactggattggttggta
atgttggatagtaggggattgaatggaattctggccgatgaaatgggtttgggcaaaaca
atccagacaatcgctttgcttgctcatcatgcttgtcagaataatatctggggtccacat
ttgattattgttcccactacagtgatactgaactgggagatggagtttaaaaaatggtgt
cccgcatttaaaatattcacttattatggctctacgaaagaaaggaaggagaaaagaaaa
ggctggaatcgtcctaatgcttttcacgtttgcattacatcttacaaattggttattcga
gattacagcacttttcgacgaaaagcatggcagtacatgatattggacgaggctcaacat
atcaaaaactataaatctgaaagatggcaaatgctactgcattttcgagcaagacgtcgt
ttgttactgacaggcacccctctacaaaattctgttatggaactgtggtctttgatgcat
ttcctaatgccggatatattctgttctgacaaagattttcgcgaatggttttccaatccg
cttacgggaatggtagaagggacgatggagttcaacgaccaagtgattaagcgtttgcat
catgtacttcgcccatttttgcttcgtcggttgaaatctgaagtggagacgcaacttccg
aagaaatacgagcacttaataaaatgcagtttgtcaaagaggcagcgttatctttacgat
gaatttatgagtcgatccaataccaaagcacagcttgctactggtagtattttcaacata
atcagtgtgctgatgcaactccgaaaagtgtgcaatcatccaaatttgtttgaacaaagg
ccagtcatgtcaccgttggttttggatccgatcatttatcgaccaccgtctcttgtttgc
gatttgcctagcaaatgcaatttggagattctgccgctgaggttgaacgtgttgcagcaa
gaattttcaagcggttttgcgtgcaattgcagtggaaaacttttttctacaaagttcgaa
cagccttgtaaaatcgaaagtttgccacaaatttcagaactgccggtcggtttgtttaac
ttcaaatcgcttttcctggataacagaaacaccacagctctgttggacaatagcagagca
gttgtgaaagaaaattccaacatgaaagattcttcagatcagaaattgacagcggtaatt
ccactgaagaaacgttgctcaacgtcgaatggtgttgttgttagcagacctgcttctgtg
gacgtgtcgcccaagggagcagggtcatcagtgaaaagtgaagaaaagccgaaagtgatt
tattggcgtttgaatccgattggcggcgtgaacgcttccggcggtcgggtggggacgacc
agggtactgcgaccgatctacacggcgaccactagccgcatgccgcgtcctgcattggcc
agtcgtggcccatgcgcagctggcccatcgttggttcgtctggtgagaccgtcgtttggt
gcagtcgcgactagggcgcccgctgtagccgcgacgcctgcagcaagccagcagtgccga
tcgccggccactgttcaaagttaccacggcggcgccctcagaccgcggcttggtactacc
agtcgtccgccgatggcatgtcgtcagtcgtttctgcagcagatggtgaggccgaacggc
ggctcaccgacaaagccgctttcagccagagcgttccttgattacagacttcagactgca
ggagctgtggaagcgtccggcagaactacgacaggcatgattcacgtccgtttgcctggt
tcgaatccgacatcgttctcggggcagtcttcggccctgtccaccgcatcttcattacgg
gtaggcgccggagcgaaagtgaacattcgctgctctgttccgaaccagaacattctcatg
cccagaggggcgttgattcagttgcacgctggcaaactgtgcataccaattcgaccagtg
cccccaccagcatccaccgccagtaacagtagtagtagtggaacggcggttgtggaaaac
gttcagctgaaaaaaaccccaatggctgccttgccgtcgtctactacatacgaaagagga
cgaagaaagcagcaacagcagctacaaccacaaccacaacaacgacaacaaccaacgggg
caacaacgacaaatcagcagtgaagagtcgcctgcatttttgtcacctgtggaaaattgt
aatagacgagtgacgaggaggagaaaagctacttcacaagttgaaagtagcagttttgct
gatagtccagatgatgattttaatgttgccgccgagagtaagaaaattgctcttcgaagt
ggagcaacagttggtagtggtagcaagaggagacgtagtgccgctgttgtcgccagtact
agtagtaggagtgacagttctaagcttagacgttcaacacgttcgtcgtttaaagcagcg
gtagagaaaaattcgaatatttttgctccatctacgcattctgacgatcatcattacaac
aatgaagacgaaggagaagaattgccttcgcgaagtggggacgtggaacggatggacggc
acgtcaacccaggggactgtctctttcgaccctgaagcggagacgtcgttggaaaaagct
atactgaaattgctcaacaaacaagtcaatgatctgtggtcagaaataacgttaagcaaa
gctgaaacgaagcttcgtattcaaaacaatttgataaatcaaaatagagaacgttgtttg
gccaggccaatgtacggtagtgatcttaggatggcatttactattgaaaagcgttcagtt
ccactgagtcgaacgctcgaggacatattccaatctgtgcgattcttgttgcaacaattt
ttggtatacgttccggcggcgcttatttcggaaccgttgtttcgacccacgtaccgtagt
tgtgctgttgaatacgccgaagtggctatgcgaaccagcatgaatagattgttgaagaac
aaattggacgtgtttcgtgctgtcgaatacgcgcaacgtctctgctttccagagttgcgt
ttgatcgaatacgactgcggaaaattgcaaagcctgtccgcattattgagacgtttgcaa
gcggaagggcatcggtgtttgattttcacacagatggctcgaatgctggacattctcgaa
gcttttctcagctatcacgggtatatgtaccttcgactggacggcgctactaatatcgaa
cgcaggcaaatgttgatggaacgtttcaatcatgacaagaaaattctctgcttcatcttg
tccaccagatctggtggtgtcggagtcaatttaaccggtgctgacactgtcatcttttac
gattctgattggaatccaacgatggatgctcaagcgcaggatcgctgccacaggattggt
caaaccagggatgtccacatatatagattgatctgtgaacgaactatcgaagagaatata
ttgttgaaagctactcaaaaacgcaagcttggtgaactagcgattgacgaaggcggtttt
aaagctgactttttccacaatactaatatcaaagaattgtttgacatggaagagagtgta
tttgttcgagatgtgtctgatgcggacattcagcaggcgatgagcaaagttgaagatgac
aacgacgctattgcggcgcgaattgcagtggatgaagcgcaagcggaagaaagagccgac
gaagaggaggatgatgaaaatgctactagtggtcaaaagaaatccgacgccgtgcaaaac
gccaatgacaattctgttgccgaatcttcagatccggatgttctcagagttctcgaagag
atgaaagatgtgttgtcaaagatgagcgaggtagagcgatacgcattggaatatattgaa
gaagaacgtgcgtttgaattcagcgaagagctcaaaggggttgacaacgagatcgaagaa
cgtaaaatggcgttgatgcaagctcattacagcgagatgagaagtgcaagagcgatgcaa
gaggcggaagcgggcgaagaatttgcaatcacctacgaccggcgggatgcatttgcaaag
gttagggatggcgattttaacggtgaatcggtgaaaaattctgggaaggtttctttgttg
ttaacaaaagaagaaggcgtgactagcgttgttgctaaatcgtcaacgtcttcatcggtt
ccggctactaagtgttcactttcgaacgaaaagttccccattagaactcgcagaaccagg
aacaacaacagtactgttgactga
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integrated database retrieval system
