KEGG   Trichinella spiralis: Tsp_11545
Entry
Tsp_11545         CDS       T01609                                 
Name
(RefSeq) hypothetical protein
  KO
K10752  histone-binding protein RBBP4
Organism
tsp  Trichinella spiralis
Pathway
tsp03082  ATP-dependent chromatin remodeling
tsp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Tsp_11545
   03083 Polycomb repressive complex
    Tsp_11545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_11545
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     Tsp_11545
  Histone modification proteins
   HAT complexes
    HATB complex
     Tsp_11545
   HDAC complexes
    Sin3A-HDAC complex
     Tsp_11545
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     Tsp_11545
    PRC2.2
     Tsp_11545
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     Tsp_11545
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    Tsp_11545
  Chromatin remodeling factors
   NuRD complex
    Tsp_11545
   NuRF complex
    Tsp_11545
   NuRF complex (fruit fly)
    Tsp_11545
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 Beta-prop_RIG_2nd WD40_Prp19 Mt_ATP-synt_D Beta-prop_EIPR1 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 Beta-prop_WDR19_1st Beta-prop_IFT140_1st MIOS_WD40 WD40_MABP1-WDR62_2nd WD_LRWD1 ANAPC4_WD40 Rrn6_beta-prop Beta-prop_DCAF4 Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 10902044
NCBI-ProteinID: XP_003373133
LinkDB
Position
Unknown
AA seq 480 aa
MKSFAFEYKFSHQLKYASYSVQSLPSCDFPDRSKLLLASIPSEEDIAKLRKKPQKGKTGV
SICESLSDMISERRSVSSKWRIFNMKFMPQNPLQVACRNEGNDILFCDLTKPSDDTNLME
KNTWTLKGLGSCGYGLSWNASFPGMLVAAGHDNTICLWSVLHSIVNSDTIHPLSTFRIRR
GAINDVCWHPFYDFVFGTVDNNGKLFIWDVRTNGDGEFALQSNTTNSEIMCLSFNPFDQN
YLATGDIKGNVAIWDDRNLYRPLKLLQYHSNEVTQVVWSPFHEDLLASAGADGHIILWKI
GVASLPEKLPEIDWNYYKEKTAGFYDVTEFEKQFKALHIVPMKEPEDLLKKLNEEEKREM
TRLDAFIKANESIIQECEKENSVQLAKFYFSCYVMQLKLFIFISVQLNKIAKFPPMDHWL
PEEYEDYFVCVNKNSIGYNRYRDHVEQYRELGYRRMRLMNEEEGVFNSYIQTRLQSVHPA
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgaaatcttttgcatttgaatataaattcagtcatcagctaaagtatgcatcatattct
gttcaatctttgccaagttgcgattttcctgataggagtaaattattattggcttcgatt
ccatcagaagaagacattgctaaattacggaagaagcctcagaaaggcaagactggtgtt
tccatatgcgaatctttgtcggatatgatcagcgaacgtcgatcagtttcatcgaaatgg
cgaatttttaacatgaaattcatgccacaaaatcctttgcaagttgcttgccgaaacgaa
ggaaatgatattttattctgtgatttaacgaagccatccgatgacaccaatttaatggaa
aagaatacctggactttgaaaggtttgggttcgtgtggatatggcttatcatggaatgcc
agcttccctggaatgctcgtcgctgctggccacgacaatacaatttgcttatggtcagtt
ttgcattcaatagtcaacagtgacaccattcaccctttgagtacgtttcgaattcgtcgt
ggtgctattaatgatgtctgttggcatcctttttatgactttgtattcggcacagtcgac
aacaatggaaaacttttcatttgggacgttcgtacaaatggagatggagagtttgcactg
caatcaaatacaacaaatagtgaaattatgtgcttgtcgtttaatcccttcgatcagaat
tatttagcaactggtgatatcaaagggaatgtcgctatatgggacgacagaaatttgtat
agacctttgaaattactgcagtaccacagcaatgaagttactcaggttgtctggtcaccg
tttcacgaagatttactagcatctgccggagcagatggccatataattttgtggaagatt
ggagttgcttcattaccggaaaaattgcctgagattgattggaattattataaagaaaag
acggctggtttttatgatgttaccgagtttgagaagcagttcaaagcacttcatattgtt
cctatgaaagagccagaagatttgctgaaaaaacttaatgaagaagagaaacgagaaatg
acacgattagatgcgtttattaaagcaaatgaaagcattatccaggaatgcgagaaagaa
aatagtgtgcaacttgcaaagttttatttttcatgctatgtaatgcaattgaaattattc
atttttatttctgtacagctaaataagattgccaaatttccaccgatggatcactggtta
ccagaagagtatgaagattatttcgtttgtgtaaataaaaattctattggatacaacaga
tatcgagatcatgttgaacagtaccgtgaattgggttatcgacgcatgcgcctgatgaat
gaagaggaaggtgtctttaattcatatatccagacgcgtttacagtctgttcatcctgca
taa

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