KEGG   Trichinella spiralis: Tsp_11644
Entry
Tsp_11644         CDS       T01609                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
tsp  Trichinella spiralis
Pathway
tsp03020  RNA polymerase
tsp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Tsp_11644
  09124 Replication and repair
   03420 Nucleotide excision repair
    Tsp_11644
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_11644
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_11644
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_11644
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     Tsp_11644
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Tsp_11644
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Tsp_11644
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 10903181
NCBI-ProteinID: XP_003371436
UniProt: E5SRG4
LinkDB
Position
Unknown
AA seq 172 aa
MFFLMNLEHDVLLHPRYFGPHLYNTVRQKLILEVEGQCMGKYGFIITVTGILSIGAGLVQ
SGCGFVRFPIKYQAVVYRPIKNEVVEGRVENVSKLGLFCLVGPLTVFISRHCIPHDLIFR
PTAQPMSYCNEDESIEITVNMNLRLKILGTRVDANNIFAIGTLMDDYLGVSD
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttttctgatgaatttggaacacgatgtacttttgcatccacgctacttcgggcct
catttatacaatactgttcgtcagaaattgattctcgaagttgaagggcagtgcatggga
aagtatggttttatcataaccgtaactggcatcctgtctattggggcaggattggtgcag
tccggatgtggcttcgttcgttttccaatcaaatatcaagcggtcgtatatcgacctata
aagaatgaagtcgttgagggacgagttgaaaatgtatcgaaattgggattgttttgtctc
gttgggccgctgacggttttcataagccgacattgcatacctcatgatttgatatttcgt
ccaactgctcagccaatgtcttattgcaacgaagacgagtcgattgaaattaccgtcaac
atgaatcttcgtttgaaaattttgggaaccagagttgacgcgaataacattttcgcaata
ggcactctaatggacgactatttgggcgtttctgattag

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