KEGG   Trichinella spiralis: Tsp_11979
Entry
Tsp_11979         CDS       T01609                                 
Name
(RefSeq) splicing factor 45
  KO
K12840  splicing factor 45
Organism
tsp  Trichinella spiralis
Pathway
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_11979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_11979
Spliceosome [BR:tsp03041]
 Complex A
  U2 snRNP components
   U2 related factors
    Tsp_11979
 Complex B
    Tsp_11979
SSDB
Motif
Pfam: G-patch RRM_1
Other DBs
NCBI-GeneID: 10903035
NCBI-ProteinID: XP_003371372
UniProt: E5SRA2
LinkDB
Position
Unknown
AA seq 417 aa
MFENNTLFIFCVTVIAIVYPICMQVCKVEQCRYTMVWIHLWQEFLIQMKRTHANRPFPKA
CIIFHIAHESWKKNLKLLKAHMHLKRVAALQKVRPPPSDEQHQGMSTLSKAGNKNSGSSV
GSAMHSSLAKQQAVSVQDEWRVEDEYDPNHPNEFANLVTFRDNARSKFGCQSYTRRSGVE
KTNYSSSGDEVGEEEKPIGKWNSLCERPERWRSTGAAIAPPPELIEQDKQTAVSESETSD
SSFMPPPPPPTASARGLDFAARIMERYGYKQGSGLGRDEQGMSTALQVEKVGTRHGKIIH
ESSSAATASTTEVNVTDELRNPTKVMLLRNMVGAGEVDSELQPEVQDEMLKYGEVRRCMV
VEVPNASDVDAVRIFVEFARVEQAIKAVVALNGRFFAGRSVMASFYDPEKFARLELY
NT seq 1254 nt   +upstreamnt  +downstreamnt
atgtttgaaaataataccttatttatcttttgtgttactgtaattgcaattgtgtacccc
atttgtatgcaagtttgtaaagttgaacaatgtcgttatacgatggtttggattcacctt
tggcaggaatttctaattcagatgaaacgaacacatgcaaatcgtccattcccaaaggca
tgcattatttttcatattgcccatgaatcttggaaaaagaatttgaaacttttgaaagcg
cacatgcatttgaaacgagtcgctgcgttgcagaaggttcgtccaccgccaagtgatgaa
cagcatcagggtatgtcaacgcttagcaaggccggaaacaagaacagtgggtcgtcggtt
ggcagtgctatgcattcgtcgttggcaaagcagcaggctgttagtgtgcaggacgagtgg
cgggttgaagacgaatacgatccaaatcatccgaacgagttcgccaatttggtgacgttc
cgcgacaacgcccgttcgaagttcggatgtcagtcgtatacgcgtcgaagtggtgtggaa
aaaacaaactacagttccagtggagacgaagttggcgaagaggagaagccaattggtaag
tggaattcgctttgcgaaaggccggaacgatggagatcgaccggtgcggcgattgctcca
cctcccgagttgattgaacaagacaaacagaccgcggtcagtgaatccgaaacgtcggac
agttcattcatgccgccaccgccaccgcccacagcatcggccaggggtctcgattttgcc
gcccgcattatggaacgttacggttacaagcagggtagcggtttgggtcgagatgagcag
gggatgagcaccgcgttgcaagtggagaaggtcggcacaaggcatgggaaaattatccac
gaatccagctcggcggccactgcttccaccaccgaagtgaatgtcaccgacgagttgcgc
aatcccaccaaagtgatgcttctgagaaatatggtcggcgctggcgaagtcgacagtgaa
ctgcagcccgaagtacaggacgaaatgttaaaatacggcgaggtgcgtcgatgcatggtg
gtcgaagtccccaatgcgtcggatgtagatgcggtgcgcatctttgtcgaatttgcccgc
gtcgaacaagccatcaaagctgtagtcgctttgaatggacgcttctttgccggtaggtcg
gtaatggccagcttttacgatcctgaaaaattcgccagactcgaactgtactaa

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