Trichinella spiralis: Tsp_11986
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Entry
Tsp_11986 CDS
T01609
Name
(RefSeq) nucleoporin autopeptidase superfamily
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_11986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_11986
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_11986
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
Tsp_11986
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Tsp_11986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
10902979
NCBI-ProteinID:
XP_003382331
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
SQPSSTIAGNLFGDPANTKPTLSFFSSSVPANALSSSSFPGVAQQSAGLNTNYVVPIGTD
PNVLAAQENLVRSQLQAMANSPYGESPLLKLTESHSELLKNPTDPLQMRKALDLSTLSRV
VPETVMLPPSLAALVDDLDEEVVSGSHDGFVPRDRIKKLVLKKRVQCSNTNCTPFLPELS
FFDNAKPITSIDEGSNLSNGSHADNESAAVSLINNNTSRDRKAKSNSSPSITKSSDFSIN
GTVEVSEYDHIASSGGTSRSGIESKMSDKNNYSTSASTNVVDLNDSGTSSTGVKLFNKKG
LKITSTRSDYYFTPNLDELASKMTRSGECVVDRFEVGRHGYGKIVWRGPLNLTDLNLDKL
VFFELKEVTVYPDASSKPPIGQGLNRAAIITLERVWPNDKTRQEPIKDAKRLEHLGYEEK
LKRACEKMNAKFVSYAPTTGSWIFEVKHFSKYGLDDDSDEAEENGGPLSKQSEEKIVEKK
ETKDKSPHPKANGICTTVSSVVKLGAESPKSSSISANGKITSESTTKKKTIEQSNINETD
IGGKDEKSKEAAILAETKKKPDDVCISDESETTAVQFNVEFIPPQKSPILNHLPAKLHHR
QLSNECRIGWHCNRVSYSSCSNTMSTITRLQMKTKRDDEAFKNVLKMLLKCCFDLSERLD
KDSSPFFSPVDAVKLIVAYDEILKDQTKSSSS
NT seq
2080 nt
NT seq
+upstream
nt +downstream
nt
cagccaaccttcgagtactattgctggaaatttattcggtgatccagctaacaccaagcc
gacgctatcttttttttcttcttctgtcccagcaaatgcattgagcagttcttcttttcc
cggagttgcacagcaaagtgcaggtcttaatacaaattacgttgtgcccattggaactga
tccgaatgttctggcagcgcaagaaaatttggttcgttctcagttgcaagcgatggcaaa
ttcaccgtacggcgaaagtccgttgttgaaattaaccgaatctcattcggagttattgaa
aaatccaacggatccactgcagatgcgcaaagctttggatttatccactttgtctagagt
agtgccggaaacggtcatgctacctccgagcttggcagcactggttgatgatttggacga
agaagtggtgagcggttcgcatgatggttttgtaccaagggacaggataaaaaagctcgt
gctgaagaaacgtgttcagtgttccaatacgaattgtaccccgtttctaccggaattatc
atttttcgataatgcgaagccaattacgtcaatagatgagggatcgaatttgagcaacgg
ttcccatgcagacaatgaaagcgcggccgtttcactgatcaataataatacatccagaga
tcgaaaagccaaatcgaacagcagtccaagcattaccaagtcgtcggatttttcgataaa
tggaacggttgaagtttctgaatacgaccacatcgcctccagtggtggtactagtagaag
tggaattgaaagcaaaatgtcggataagaataattattcaacgtcagcgtcgaccaacgt
tgtcgacctgaacgacagtggaacgtcgtcgacaggagtgaaattattcaacaagaaagg
cttgaaaatcacatcaacacgttcggattattatttcacgccaaatttggacgaactggc
gtcgaaaatgacacgctcgggcgagtgcgttgtcgaccgtttcgaagttggtcgacatgg
atatgggaaaattgtttggcgaggaccgttgaatttgaccgatctcaatttggacaagct
cgtcttctttgaactgaaggaagtgaccgtctatccggacgcctcgtccaagccaccaat
aggtcagggcttgaatcgggctgctataatcacattggaacgtgtctggcccaatgacaa
aactcgtcaagaaccaatcaaagatgctaaacgattggaacatcttggttatgaggaaaa
gttgaaacgggcgtgtgaaaaaatgaacgcgaaatttgtcagttatgctccaactactgg
ttcttggatttttgaagtgaagcatttttcaaaatatggattggacgatgattcggatga
agctgaagaaaatgggggaccactttcgaagcagtcggaagaaaaaattgtcgaaaagaa
agaaacgaaagataaatcgcctcatcccaaagcgaatggtatttgtacaacggtatcgtc
tgttgtgaaattgggcgctgaaagtccgaaatcgtcttccatttctgctaatggaaaaat
cacgtcggaatctacaactaaaaagaaaacaatcgaacagagcaatatcaatgagacaga
tattggtggaaaagatgaaaaaagtaaagaagcagcaattttagccgaaaccaaaaagaa
gcctgacgatgtctgtatttccgatgaatctgaaacaactgcagttcaatttaatgtgga
atttattccacctcaaaaatctcccattttgaatcacttgccagctaaactgcaccacag
acaattgtccaacgaatgtcgaataggatggcattgcaacagagtctcatattcctcttg
tagtaataccatgtcgaccattacacgtttgcaaatgaaaaccaaacgtgacgatgaagc
gtttaaaaatgttctgaaaatgttgctcaaatgctgcttcgatctaagcgaaagattgga
taaagattcgtctccatttttttcgcctgtcgatgctgtgaagctaattgtcgcgtacga
tgaaattttaaaagatcaaactaaaagtagtagtagttga
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