Trichinella spiralis: Tsp_12018
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Entry
Tsp_12018 CDS
T01609
Name
(RefSeq) putative TRAF and TNF receptor-associated protein
KO
K19619
tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_12018
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
Tsp_12018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos2
UBA_4
UBA_8
Exo_endo_phos
SPASM
TAP_C
Motif
Other DBs
NCBI-GeneID:
10905866
NCBI-ProteinID:
XP_003368460
LinkDB
All DBs
Position
Unknown
AA seq
420 aa
AA seq
DB search
MPHTQIIMAIINTPKEKKNCFPKRHYSIFTIAGYGKANTCRSDLILRRTNFPSTARPSVI
EFSGKLKKKASVAQLGETELMSSSEDDNDIPDDDVCLLRTDLFGTVTGTNAACGQFYLQD
CKWDLTVAINRYFDQPDNARLPPWIRRMVSQDKDTVKTMHFSILSWNLDGLDNRNIVSRV
NAACDEILELEPSVLLLQEVVPENFEVLKRRLGEKYQVLENNDRYYYHTSIFIHRTNLEC
TEHHVVDFARTSMNRNMFIALIEFDGDVQLCLVNSHLESGRKESRIRKSQLEEIWSLMAA
SPDDVTVFFGGDTNLGFGELKTVPANVTDLFQDCGSPVDACLTWDPATNANLNIPKRCRQ
RFDRIFVKASKPARFKPIEFSLVGKKLIRSSLCHPSDHYGIYCKMEKIENIEPVDNNEEK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgccacatacgcagataatcatggcgattataaatacaccaaaagaaaaaaaaaattgt
tttccaaagcgccattattcaattttcaccatcgcaggctacggcaaagcaaacacttgc
cgctctgacctaattttgcggcggacaaattttccttccactgcacgaccgagcgttatc
gaattttcgggcaaattgaaaaaaaaagcatcagttgcacaattaggcgaaacagagcta
atgtccagttcagaagatgacaacgatattcctgacgacgacgtttgcctgttgcgaaca
gatttatttggaacagttacgggcaccaatgccgcctgcggtcaattttatctgcaagat
tgcaaatgggatttgaccgttgcgatcaaccgttatttcgatcaacctgacaacgcacga
cttccgccgtggattcgtcgaatggtctcccaagacaaggatacagttaaaacaatgcac
ttttccatcctgtcttggaatttggacggtctggacaatcgcaacatcgtcagccgtgtt
aatgctgcttgcgacgaaattttggaacttgaaccgagtgtgctgcttttgcaagaagtt
gtaccggaaaatttcgaagtgcttaaacgacgactgggggagaagtatcaggttttggag
aacaacgaccgctactattaccacacgtccatcttcatccaccgtaccaatttggaatgc
accgaacatcacgtggtcgattttgctcgaacttccatgaatcgaaatatgttcattgct
ttgattgaatttgatggtgacgttcagctgtgcttggtgaattctcatttggaaagtgga
cgtaaagaatctcgaatacgcaaatcccaactggaggaaatttggagtttgatggccgcg
tccccggacgacgtaaccgtattttttggtggtgacacaaacttgggcttcggtgaattg
aaaacagttcctgccaatgtgacggatctgttccaagattgtggaagtcctgtggatgcc
tgtctgacttgggatccggcgacgaatgcgaacctcaacattccgaaacgttgccgtcag
cgttttgatcgaattttcgtaaaggcatccaagccggcgaggttcaaaccgattgaattt
tcgctggttgggaagaaacttattcgaagtagcttatgccatccgagtgaccattacggt
atctattgcaaaatggagaaaatcgaaaacatcgaacctgtcgataacaatgaagagaaa
tga
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