KEGG   Trichinella spiralis: Tsp_12061
Entry
Tsp_12061         CDS       T01609                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_12061
Spliceosome [BR:tsp03041]
 Complex B
  Other components
   Complex B specific factors
    Tsp_12061
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd LisH_TPL Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML EIF3I Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 LisH_PAC1 Mala_s_1-like Beta-prop_HPS5 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 10913562
NCBI-ProteinID: XP_003372096
LinkDB
Position
Unknown
AA seq 464 aa
MSNIEIEAVDIIRLIEQYFKENNLTRSLEMLQEETNITLNTVDSIDTFTSDILCGRWDTV
LRVIQPLKLPAKKLVDLYEQVIVEMIELRELGTARLMLRQTEPMIYMKRVDPERHSKLEH
LLTISFFDPRDAYEQGTNKEIRRQAIATDLSNEVIVVPPSRLMALLGQALKWQQHQGLLP
AGTKIDLFRGKTAMQQQEDERCPTQIHVTINFSSQVYPESAMFSPDGQYLVSGSVDGFIE
IWNFLTGKLRKDLKYQAQVWKVSLGQCIRRLEKAHQEGVTSVQFSRDSSQVLSSSYDYTI
KLTDLLTVFAACVECDLQILNILEYTESGVSTECVNNIRRMGGVLPDNVSITSLALMPRN
PEHILVCTKSPSIFIINMQGQTVRSYSSGKREGGEFVCSCISPRGEWIYCLGSDRLLYAF
STATGNLERTIQAHDKDVIGICHHPHQNFVATYAEDGLLQIWKP
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgagcaatattgaaattgaagcagtggacatcattcggctaatagagcagtattttaag
gagaacaatttgacgcgatctcttgaaatgctacaggaagaaacgaatatcacattgaat
actgtcgatagcatagatacgtttacatcggatattctttgtggtcgttgggatactgtt
cttcgtgtaattcaacctttaaagttaccagccaagaaactggtcgatctctacgaacaa
gtaattgtggaaatgatagaactgcgcgaattgggcaccgcccgactgatgctacgtcag
acggagccgatgatctacatgaagcgtgtggatccggaacgtcattccaaattggagcac
ttgttgacgattagttttttcgatccacgtgatgcctacgagcaagggacgaataaagaa
attcgcaggcaagcaattgcaactgatttatccaacgaagtgattgtcgttccaccgtcg
cgtctgatggctttgctcggtcaggcattgaaatggcaacagcatcagggtttgcttccg
gctggcacaaaaatcgacctgtttcgtggcaaaactgccatgcaacagcaggaagacgag
cgctgcccgacgcaaatccacgtcactattaatttcagttcacaagtttatccagaatcc
gcgatgttttcgcccgacggccagtatttggtctcgggttcagtggacggcttcatcgag
atatggaactttttgaccggcaaacttcgcaaagatttgaaatatcaagcgcaggtatgg
aaagtatctttgggtcagtgtattcgcagattggaaaaagcgcatcaagaaggtgtgacc
agtgttcagtttagtagggacagttctcaagttctctcctcttcttacgattatactatc
aagttgactgacttactaactgtttttgctgcttgtgttgaatgtgatttgcaaattttg
aacattttagaatacacggaatcaggagtgtctactgaatgtgttaacaatattcgccgt
atgggcggcgtgcttcctgataacgtttctatcacaagtttggctttgatgcctcgcaat
ccggaacacattttagtttgcacgaaatcaccgtctatttttatcataaatatgcagggt
cagactgtgcgcagttacagcagcggaaaacgtgaaggtggagaatttgtctgctcttgc
atttctcccaggggagaatggatttactgtttgggcagtgatcgtctgttgtatgcattt
tcaactgcaaccggcaatttggaacgtacaatacaagcccacgacaaggatgtgatcggc
atttgtcaccatccgcatcagaatttcgttgccacgtatgctgaagatggacttttgcaa
atttggaagccgtag

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