Trichinella spiralis: Tsp_12103
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Entry
Tsp_12103 CDS
T01609
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
tsp
Trichinella spiralis
Pathway
tsp04382
Cornified envelope formation
tsp04512
ECM-receptor interaction
tsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
Tsp_12103
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
Tsp_12103
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
Tsp_12103
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsp04147
]
Tsp_12103
00536 Glycosaminoglycan binding proteins [BR:
tsp00536
]
Tsp_12103
Exosome [BR:
tsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
Tsp_12103
Glycosaminoglycan binding proteins [BR:
tsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
Tsp_12103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
10904793
NCBI-ProteinID:
XP_003375582
LinkDB
All DBs
Position
Unknown
AA seq
1810 aa
AA seq
DB search
MRILTTVVVSLLVFFNRRQFTNAYAPPDCKGCAPPCICPGLKGERLLPFSKEFEPFAAPS
LQLNRLLGDVGFMGLPGHPGEPGDPGDEGPEGMQGQIGQQGEPGPVGLKGYRGAQGEPGL
RGLPGIPGLAGFDGPMGPPGIPGCNGTDGRMGAPGLPGLPGSQGPPGMEGAQGPRGDTGE
GGINSAGIKGERGESGKPGTQAIEFYYAQECDNNFNKQYGRPGMPGRDGVKGEKGDIGYV
GYPGPPGPPGPKGAMGLFRAGQKGEKGAAGLPGSPGPPGQLTALRLGEMDILQGPEGNPG
PKGEKGDYGTVGPPGMPGAVGEPGYPGLKGMKGEPGPPGALGKRGKDGTRGAAGEKGSTG
DAGGPGRPGRPGLKGEMGDEGTPGRRGPQGDPGPPGLPGVGRGLKGARGIEGPDGAPGPK
GLPGKDGLPGLSGKRGPIGLPGPPGEVGVDGRPGYSEKGMKGNDGTIIPLKIYLHRYPGL
RGEPGYPGMPGLQGPPGEIGFPGSTIYGPPGRDGYPGLDGIPGPPGERGDPGKPGLKGMP
GTGKPLVGPPGQIGFPGLQGDPGRVGVPGRVGAPGLKGLPGDDCGKCPDGTPGVKGTRGD
AGLPGYAGIRGPEGSPGLPGPKGKTGFPGRDGEPGLQGYRGAPGYPGRPGDKGDAGDAIG
TPNAGRPGAKGEPGIPGFPGQRGPMGDAGRDGSPGLPGAPGLPGERGLPGSRAKNGRMGK
AGFPGPKGEPGDSFPGPPGIPGMKGIRGDPGIPGFAGPQGAAGPAAPDMILKGEPGLPGR
PGIPGQKGEFGYPGLPGERGDPGYAGQPGPAGMIGETGPSIPGIPGPKGYPGMKGSNGLP
GFPGIPGLPGKDGIPGVGGTKGVKGDAIVGPIGPAGPQGSRGVPGERGVPGLPGQDGAEG
DIGQKGYPGLKGNAGSAGQPGLMGLKGAQGLDGLPGLPGSDGRPGIVGSPGEPGRPGLRG
NDGIPGAPGKSGPIGSAGVPGAAGLPGMAGTPGLKGESGEPGFPGAQGPQGDAGLPGRPG
IDGQKGESGLPGIMGPKGMVGEVGLAGLPGRSGLAGRKGEQGDHGFAGTKGTRGDPGYLA
AQGPPGDMGDPGEVGPAGNPGVAGLQGVRGEKGAPGDSFPGASGNAGERGDPGLPGLAAK
PGFPGPPGDAGVVGMKGIPGNAGTPGLPGMPGQPGIPGSKGERGNAGIPGVRGLDGAKVW
GEDGLPGQKGYPGLAGNNGLEGMPGLPGMPGVKGEAGLSGIPGLPGVGGLKGNKGESGLP
GYPGPKGDIGVPGKAGYPGVKGEVGIGGIPGKRGRDGIPGIPGRKGDAGNPGLPGAPGFG
VKGDPGFPGLPGMEGTGSPGAKGERGEAGLPGMMGSAGASGDPGYPGQIGEKGVPGIPGK
RGKKGASGLPGPRGDAGYPGMKGQGGRPGAEGRPGDFGVQGQPGPAGDAGFPGRKGESGV
PGLVGVPGFPGAKGDRGDPGSFGLPGFPGLKGDTGDPGPVGPMHPYSEQRHSPPGMRGRP
GEPGIQGPAGLPGSRGMPGPPGVPGARGDKGLAGTPGRPGVPGPKGSSGNFGNAGFPGNV
GPPGNPGFPGVPGIRGGIAPSRGFYFARHSQTTAVPNCPAGTTPMWTGYSLLYIQGDGKS
SGQDLGLPGSCLRKFSTMPFMPCNLNNECHIASRSDYSYWLATEEPMTASMAPVSGFGIR
PYISRCVVCELPTQVVALHSQTNDIPRCPRGWTGLWTGYSFIMHTAAGAEGTGQNLQSPG
SCLESFRTLPFIECHGRGTCNHYATNHAFWLAVIDRDMMFKKPYSETLKAGGLKQRVSRC
QVCMKNPPVY
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgaggattttaacaacagtcgttgtatcgttgttggttttcttcaatcggcgacaattc
accaatgcatacgcaccaccggattgtaaaggttgtgcaccaccatgcatttgtcccggt
cttaaaggtgaacgacttttacctttttccaaagaatttgaaccatttgccgctccttca
ttacaactcaatcgcctattgggtgatgttggtttcatgggactaccaggtcatcctgga
gaaccaggtgatcctggagacgagggtcctgaaggtatgcaaggccaaataggccagcaa
ggtgaaccaggaccagttggcctgaaaggttatagaggtgcacaaggagaacccggtctg
cggggtttgcccggcattccagggttggctggattcgatggtccgatgggacctcctgga
attccaggctgtaatggaactgatggacgtatgggtgcaccgggacttccagggttacct
ggttctcagggtcctcctggaatggagggtgcacaaggaccgcgtggtgatactggcgaa
ggaggcatcaattctgccggtattaaaggtgaacgtggtgaatccggcaaacctggaact
caggcaattgaattttattatgctcaagaatgtgacaataacttcaacaaacaatatggc
agacctggaatgccaggcagagatggtgtcaaaggcgaaaaaggagacatcggttatgtg
ggctatcctggtcctcctggaccgcctggaccaaaaggtgctatgggcttgttccgagcc
ggacagaaaggagaaaaaggagcagccggcttgccaggttcacctggaccgcctggacag
ctcacggctctgcgccttggcgaaatggatattcttcaaggaccggaaggaaatcctggc
ccgaaaggagagaaaggcgattatggaacggtcggtccgccaggaatgcccggtgctgtt
ggagagcctggttatcctggattgaagggtatgaaaggcgaacccggcccacccggagct
ttgggaaaacgtggaaaagatggaacgcggggcgcggctggtgaaaaaggttccactggt
gatgcaggaggaccgggacgacctggtcgaccaggattaaaaggagaaatgggtgatgaa
ggaacccctggtcgtcgaggcccgcaaggagatccaggtccacctggtttacccggagtt
ggtcgcggattaaaaggagcaagaggaattgaaggtcctgatggagctcctggaccaaaa
ggcttgccgggaaaagatggcttgcctggtttgagtggtaaacgtggaccaataggtcta
cctggaccgccaggcgaagtcggcgttgatggtcgcccaggctattcagaaaaaggaatg
aaaggaaatgatggtactattatcccgttgaaaatttacttgcatcgctatcctggtcta
cgaggagaacctggctatccgggaatgcccggcttgcaaggacctcctggtgaaattggc
ttccctggatcgacaatttacggaccacctggacgagatgggtaccctggattggatggt
attccaggtcctccaggagaacgcggagatcctggaaagccaggtttgaagggaatgcca
ggaacaggtaaaccactggttggcccgcctggccaaataggcttccctggactgcaaggt
gatcctggtcgcgtcggtgtgccaggccgagtaggcgcaccgggtttgaaaggacttcca
ggagatgactgtggaaaatgtccagatggaactcctggtgtaaaaggtacgagaggagat
gccggtttacctggctacgcagggattcgtggtcctgaaggatctccgggtttgcccgga
ccaaaaggcaaaactggctttcctggcagagatggagaacctggtttgcagggttatcga
ggagctcccggttatcctggaagaccaggagacaagggtgatgcaggtgacgcgattgga
acgccaaacgctggacgacccggagctaaaggcgaacctggaataccaggatttcccggc
caacgcggtccgatgggtgatgccggtagagatggttcgccaggcttacctggtgcacca
ggtttgcctggagaaagaggacttcctggatcaagagcaaaaaatggacgaatggggaaa
gccggttttcctggaccgaaaggtgaaccaggggattcattccctggcccaccgggtatt
cctggaatgaagggtatccggggtgatccgggtatacctggctttgctggtcctcaaggt
gcggcaggccccgctgcgccggacatgattctcaaaggtgagcctggcttacctggtcgt
ccgggaattcctggccaaaagggtgagttcggctatcctggtttgccaggagaacgtggt
gaccctggttacgctggtcaacccggtccagctggcatgatcggagaaacgggacccagt
ataccaggaatacctggtcctaaaggatatcccggaatgaaaggctctaacggtcttcct
ggctttccaggcattcctggtctacctggcaaagatggaatacctggtgtcggtggcacc
aagggtgtcaaaggagatgcaatagttggaccaatcggccctgccggtcctcaaggttca
agaggagttcctggagaacggggagtacctggtctgcctggacaggatggtgcagagggt
gacattggccaaaaaggttatcctggattaaaaggcaatgcaggttcggctggacaacct
ggcttaatgggactgaaaggcgcacaaggattggatggcttgccaggtcttcctggatct
gacggacgccctgggatcgtcggttcgccaggtgaaccaggcagaccgggtcttcgtggc
aatgacggaattccaggtgctcctggaaaaagcggcccgataggcagtgctggcgttcct
ggagcagcaggattgcctggaatggcaggcacacccggtctgaaaggggaatctggggaa
ccaggatttcctggtgcacaaggtccacagggagacgctggtctaccaggtagaccggga
attgatggacaaaaaggcgagtcaggtcttcctggaatcatggggccaaagggaatggta
ggagaagttggattagctggtttaccaggcagaagtggtctggctggccgaaaaggagaa
caaggtgatcatggatttgctggaaccaaaggcacgcgcggtgatcccggatacctagcc
gctcaaggaccgcctggtgatatgggtgatccgggagaagttggacctgcaggtaatcct
ggtgtggcagggcttcaaggtgttcgtggtgaaaaaggagctcctggtgactcattccca
ggtgcgagtggaaatgcaggtgagcgtggcgatccaggtttgccagggttggcagcaaaa
cctggttttcctggacctccaggtgatgccggcgttgtaggcatgaagggcattcctgga
aatgcaggcacacctggcctacctggcatgcctggccaaccaggcataccagggtcgaaa
ggtgaacgtggaaatgcaggcattcctggtgtgagaggtttggatggtgcaaaagtatgg
ggggaagatggattaccagggcaaaagggttatcccggtttggctggcaacaatggtctc
gaaggtatgccaggtttacctggaatgcctggtgtcaaaggagaagcagggttgtcgggc
attcctggattgcctggtgtaggtggtctcaaaggaaataaaggcgaaagcggtttgcca
ggctatcctggtccaaaaggagatattggcgtgcctggcaaagccggctatccaggagtt
aaaggtgaagttggcattggtggaataccgggcaaaagaggtcgagatggcattccaggt
attccagggagaaagggagatgcaggaaacccaggtttgccaggtgcaccaggctttgga
gttaaaggtgacccaggttttccagggttacctggtatggaaggcaccggttcaccgggt
gccaaaggtgaacgcggagaggcgggtttgccgggcatgatgggcagtgctggtgcgagc
ggcgaccccggatatccaggacaaatcggtgaaaagggtgttccgggtattcctggaaaa
agaggcaaaaagggagcgtctggattgccaggaccgagaggagatgcaggatatccggga
atgaaaggacaaggaggtagaccaggtgcggaaggtcgtcctggcgatttcggagtacaa
ggacagcctggacctgcaggcgatgcaggctttcccggtcgaaaaggtgaaagtggcgtc
cctggcctggtaggcgttccaggttttccaggagcgaaaggggaccgtggagatccaggt
agtttcggattgccgggttttcctggtctaaagggcgacacgggcgatccaggaccagtt
ggtccgatgcatccgtacagcgaacagcggcattctccaccgggtatgagaggacgaccc
ggtgagccgggcattcaaggccccgccggtttgccaggcagcagaggcatgcctggccca
ccgggtgtgcccggtgcaagaggtgataaaggtctcgctggcactcctggacgtcctggt
gtgccagggccgaaaggatcgagtggaaattttggaaacgctggttttcctggaaacgtg
ggaccgcctggaaatcctggttttcccggcgtgcctggcattagaggtggcatagcgcct
agtcgtggtttttacttcgctcgccattcgcaaacaactgccgtaccgaactgcccagcc
ggcaccactccgatgtggacaggctattcactgctttacattcaaggtgatggaaaatca
tctggccaagatttggggttgccaggaagttgtctccgaaaattcagtaccatgccattc
atgccgtgcaatttaaataatgaatgtcacatcgcgtcacgaagtgactattcatattgg
ctagcgacagaagagccaatgaccgcctcaatggcaccggtttctggtttcggaatccgg
ccttacattagtcgttgtgtggtttgtgaattgccaacacaagtggttgctttgcacagt
caaacgaacgatataccccgttgtccaagaggatggactggattatggaccggctacagt
ttcatcatgcacacagccgctggcgccgaaggaactggccaaaatttacaatcgcccgga
tcttgtctagaatcctttcgcacgttaccattcatcgaatgccacggccgaggaacttgc
aatcattacgcgaccaaccacgcgttttggttagccgtcatcgaccgagatatgatgttc
aagaaaccgtattcagaaacgctgaaagctggtggtttgaaacagcgcgtcagccgatgc
caagtgtgcatgaagaatccgccagtgtactga
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integrated database retrieval system
