Trichinella spiralis: Tsp_12290
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Entry
Tsp_12290 CDS
T01609
Name
(RefSeq) putative WH1 domain protein
KO
K01166
ribonuclease T2 [EC:
4.6.1.19
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsp03016
]
Tsp_12290
Enzymes [BR:
tsp01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.19 ribonuclease T2
Tsp_12290
Transfer RNA biogenesis [BR:
tsp03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
Tsp_12290
Prokaryotic type
Tsp_12290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_T2
WH1
VASP_tetra
Motif
Other DBs
NCBI-GeneID:
10905671
NCBI-ProteinID:
XP_003375249
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MVAIQASVLNYDDAIKKWLPAGGSKIQEMSKVQILHHVENNTFRVVGRKLQDHDVVINCA
IIPGLKYNFTSDTFHQWRDHINQKLYGLNFLNLEDAVTFGTVMSRVLEMINSYRTQAQSN
VNRPSMAYTEQGSVTVSRQTVNGNTTSVLQDNMEMRMDNFDLRRPIQQENSANNSAYCSM
SGGGKTVSQGTLASSPSKPTAPMPPTIQPASSQAAYGQCKRPIPPASTRAQVMSDPPPAP
PPPTRSMTTSTPSRQSMAQALASAKLRPVPDEVKNARSSSTGSITETANLNRFGTISSPA
HHSIISEITSAIARRNLLKEGGGNQSPSSAVSEVNADQENTPRSDPAPSGSSLSSQDDGM
ALRTASSGAVVVNGQSNDPLEQIKMEIILCMKEEVSRAKAEILECKQFRDDLIIIVICMY
LTLVCCGGTWDYYVFTQVWPPGICFVGEGETTPCLKSFKQWTIHGLWPSFSKSQHASPAF
CYNETGFHVNDLKQIIPSLNTFWPNLLKNKSESSLWRHEWLKHGTCAFGTLDSTSAFKYF
QLGIQLKLLYSVDLILKMNGIVPTLKNSYKASDFALAVKKAIQVWPTVSCTFEKQNNSLT
TYEIAFLFSVENYFNDSLNDDNDDRN
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccattcaagctagtgttctcaactatgacgatgcgattaagaaatggttacca
gctggaggaagcaaaatccaggaaatgtcaaaagtgcagatcttgcatcatgttgaaaac
aatacttttcgtgttgttggaagaaaattacaagaccacgatgtggtaatcaactgcgct
attatacctggtttaaaatacaattttacaagcgacacttttcatcaatggcgtgatcat
ataaatcaaaaattgtacggattgaactttttgaatctggaagatgcggtaacgttcggt
acggtgatgagtcgcgttttggaaatgatcaattcttatcgaactcaggcccaatcaaat
gtaaatcgtccaagcatggcatatacagaacaaggctcagtgacggtttctcgtcaaact
gtaaatggaaatacaacatccgttcttcaggataatatggaaatgcgaatggacaatttc
gacctccgaagaccaattcaacaagaaaatagtgcgaacaacagtgcttattgttcaatg
agcggtggtggcaaaactgttagccaaggtactctggcttcgagtccgtcgaagccaaca
gcaccaatgccaccaacgatacagccggcttcttctcaagctgcttacggtcagtgcaag
aggccgattccaccggcttctaccagggcccaagttatgagcgatccaccgccggcacca
ccaccgcccacacgatccatgactacctctacaccgagcaggcagtcgatggcgcaggcg
ttggccagtgcaaaattgcgcccagttccggatgaagtgaaaaatgccagatccagctca
accggtagcattaccgaaacggcaaatttgaatcgtttcggaactatatccagtccagct
catcattcgatcatatcagaaatcacatccgccattgcgagacggaatctactcaaagaa
ggaggaggaaatcagtcgccatccagtgctgtcagtgaggtgaatgctgatcaagaaaat
acgcctcgatctgatccagctccaagcggttcatcactcagttcccaagatgacggaatg
gcattgcgtacagcttcatctggcgcagttgttgtcaacggtcagtcgaatgatccactt
gagcagataaaaatggaaatcatactctgcatgaaagaggaagtttctcgcgctaaagca
gaaattctcgaatgtaagcaattcagggatgatttaattataatagttatctgtatgtat
ctaacattagtctgctgtggcgggacgtgggattattacgttttcacgcaagtttggcca
ccaggtatttgctttgtaggagaaggggaaacaacgccttgcttgaaatcttttaagcaa
tggacaatacatggcttgtggccctcgtttagtaaatcacaacatgcttcaccagcattt
tgttataatgaaacaggcttccatgtgaatgatctgaaacaaataattccatcgctaaat
acgttctggccaaatctgttaaagaataaatctgaatcaagtttatggcgccatgaatgg
ctgaagcacggaacatgcgcatttggaactctcgattctacatctgcgttcaagtatttc
caattggggattcaactgaagctcctgtacagtgtcgatttaattttgaaaatgaatgga
attgtccctacactgaaaaacagctacaaggcaagcgactttgcactagcggttaagaaa
gcgattcaagtttggcccaccgttagctgtacttttgaaaaacagaataattctctgaca
acctatgaaattgcgtttttgttttcagttgaaaattacttcaatgattcgcttaatgat
gataatgatgataggaattaa
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