Trichinella spiralis: Tsp_12314
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Entry
Tsp_12314 CDS
T01609
Name
(RefSeq) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsp03016
]
Tsp_12314
Enzymes [BR:
tsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Tsp_12314
Transfer RNA biogenesis [BR:
tsp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Tsp_12314
Prokaryotic type
tRNA splicing ligases
Tsp_12314
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Sigma54_CBD
Motif
Other DBs
NCBI-GeneID:
10899300
NCBI-ProteinID:
XP_003366339
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
PAVKQIGNVASLPGVVWRSIGLPDIHAGYGFAIGNVAAFDVDDPAAVISPGGVGFDINCG
VRLIRTNLSESDVQPVKEQLTQCLFDFIPVGVGSRDFEECLEMGMDWTLREGYSWAEDKE
HCEEYGRMLEADPAKVSTRAKKRGLPQLGTLGAGNHYGEVQVVEEIYDKHAARRMGIDRK
GQVCVMIHCGSRGLGHQVATGEKNALVEMDKAMLRNNIKLNDRQLACAPLKSKEGQNYLK
GMAAAANFAWVNRSCMTFCARQAFAKIFQCTPDDLDMQVVYDVSHNIAKIEEHMVEGKLK
TLCVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYILTGTVKGMSETFGTTCH
GAGRAMSRAKSRRTLDYTNVLDALAAKGISIRVASPKLIMEEAPESYKNVTDVVNTCHEA
GISKRCVKLRPIAVIKG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
ccggcagtgaaacagattggtaatgttgcctctttgccaggagtcgtttggcgttcaatt
ggtttgccagacattcacgctggatatggttttgcaattggtaatgtagcagcttttgat
gtcgacgatccggctgctgttatttctccaggtggggtgggatttgatatcaattgcggt
gttcgcttgatcagaacaaatttgtctgaatcggatgtacaacctgttaaagagcagttg
actcaatgtcttttcgacttcattccggtgggggttggctcaagagatttcgaggaatgt
cttgaaatgggtatggattggacccttcgtgaaggttattcatgggcagaagataaggag
cactgcgaagaatacggacgtatgttggaagcggatcctgctaaagtttcaacaagagcg
aaaaagcgtggcttaccacaacttggtaccctcggggccggcaatcattatggtgaagtt
caagtggttgaagagatatacgacaagcatgcagctaggagaatgggcatcgatcgaaaa
ggccaagtttgcgtcatgatccattgcggaagtcgtggacttggtcaccaagttgctact
ggtgagaaaaatgccctagtggaaatggataaagcgatgttgcgaaataacatcaaatta
aacgaccgacagttggcatgtgctccattgaaatcgaaagagggtcaaaattatttaaaa
ggaatggcagcggcggctaattttgcctgggtaaatcgatcctgtatgactttttgtgca
cgtcaggcatttgcaaaaatttttcaatgcactccggatgatttggatatgcaagttgtt
tatgatgtttcacacaatattgctaaaattgaagagcacatggtcgaaggaaaattgaaa
acactgtgcgtgcaccggaaaggatctaccagagcatttcctccccatcatccgctgatt
cctgtcgattatcaattcactggtcaacctgtgctaattggtggaacaatgggaacgtgc
agctacattttaaccggtactgtaaagggaatgtcagaaacattcgggaccacgtgtcat
ggagcgggtagagcaatgtcacgggcaaagtcgagacgtacgctagattatactaatgtc
ttggacgctcttgccgcgaaaggaatttccattcgtgtcgcatcacctaagctaataatg
gaagaggctccagagtcgtacaaaaatgtcacagacgttgtgaatacatgtcatgaagct
ggaataagtaaacggtgcgttaaattgcgtccaattgctgtcatcaaaggctga
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