KEGG   Trichinella spiralis: Tsp_12318
Entry
Tsp_12318         CDS       T01609                                 
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
tsp  Trichinella spiralis
Pathway
tsp03420  Nucleotide excision repair
tsp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    Tsp_12318
  09124 Replication and repair
   03420 Nucleotide excision repair
    Tsp_12318
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tsp04121]
    Tsp_12318
   03400 DNA repair and recombination proteins [BR:tsp03400]
    Tsp_12318
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tsp04147]
    Tsp_12318
Ubiquitin system [BR:tsp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     Tsp_12318
DNA repair and recombination proteins [BR:tsp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      Tsp_12318
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      Tsp_12318
Exosome [BR:tsp04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   Tsp_12318
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 10899499
NCBI-ProteinID: XP_003366302
LinkDB
Position
Unknown
AA seq 640 aa
MEGQLDALSFSKLVMKIWQEHCSQMKSIRLIFSQLDRSAALQEMPMMEMGLTIFRSCAIM
RSSIQTKLVDSLLFLIHQERSGEDIYHEILEDRLLEETKTFYLEEGMRRIEVDDVMFFSL
KAVEMETIVPHYLAYVTKQLKLESERTEFYLDKNSGKSLISVVEDGLISPHVEDILNKGF
DCMLYNSQLDDLKLLYQLISYDPASIDELKLRFSNYISVNVISFLKGDEIDCEALRSLLK
YRDFVSNVVSYCFSDSAGIDLAARSVFSSIVNKKSAKVNELLAKFIDMKLRTGRKQYPEE
ELDQETVKALSLFRIVDGKDLFEMFYQKFLAKRLLFGKSASFDAEKAVLSELKRECGSDF
TSKLEVMFRDFETSKEFASGFKNYLIASNCLNSVVEMNVSVLTIGNWPSYPKMDIIYPQV
LLSSMSQFEHFYMEKHAGRKLSWQSYVGQCLVAARFKPGVRCTLFVEKELQVSLFQGIVL
LLFNDSDQLSFKSIQQQTNIETVELRRTLQSLACGKFRVIQKVPKGKDVNENDTFIFNAN
FTSPMLRIKINQIQSKETNEENFMTVEQVNSNRVFSIDAAIVRILKTRKTISHSELMSEI
VRQLQFSVQASDVKKRIENLIERRFISRDVKNSSNYNYIS
NT seq 1923 nt   +upstreamnt  +downstreamnt
atggaaggccaactggatgcgttgagcttttcaaaattggtcatgaaaatttggcaagaa
cattgtagtcaaatgaaatctataaggctaattttttcacaacttgatcggtctgctgct
cttcaagaaatgccaatgatggaaatgggattgactatatttcggtcttgtgcaatcatg
agaagctccattcaaacaaagctggtcgactcgttgctttttttaattcatcaagaacgc
tctggcgaagatatttatcatgaaattttggaagatcgtttgcttgaagagacgaaaaca
ttttatttggaagaaggaatgcgacgtattgaagttgatgatgtaatgtttttctctttg
aaggctgttgaaatggaaacaattgtaccgcactatctcgcctatgtaaccaagcagctg
aagctagaatcggaaagaactgaattttatttggacaaaaacagcggaaaatctctgata
tcagtggttgaagacggcttaatatcccctcacgtcgaagatatcctgaacaaaggcttt
gattgtatgctgtacaattcgcaactggacgatttgaaattactttaccagttgattagt
tacgatccagccagtatcgatgaattgaaactacgattttccaattacatctcggtcaat
gttatatctttcttgaaaggagatgagatagattgtgaagctttgcgcagcttgctgaaa
taccgtgattttgtatccaacgtagtttcgtattgtttttctgactcagccggtattgat
cttgcggcacgttcggtatttagttccattgtgaacaaaaaatccgcaaaagtgaatgaa
cttttggcaaaatttattgacatgaaattgcgcactggaagaaaacaatatccagaagaa
gagttggatcaggaaactgtaaaggctttaagtttgtttcgcatcgtcgacggcaaagat
ttatttgagatgttttatcaaaaatttttggccaaacgtttgctttttggcaaaagtgct
tcgtttgacgccgaaaaggcagttttgtctgaactgaaacgcgagtgtggttcagatttt
acttccaaattggaggtgatgtttagagattttgaaacgtccaaagaattcgcttctgga
tttaaaaattatttaatagcatccaattgtttaaattctgtcgtcgaaatgaacgtcagc
gtactgacaatcggcaactggcctagctacccgaaaatggacatcatatatccgcaagta
ctactttcgagcatgtctcagtttgaacatttttacatggagaaacatgctggtcgaaaa
ttatcatggcaatcttacgttggtcagtgccttgtagctgctcgttttaaacctggcgta
cgttgcactttgtttgtggaaaaagagttgcaagtgtcgcttttccaaggcattgtattg
ttgttgttcaacgacagcgatcagctgtctttcaaatcgatacaacagcagactaatata
gaaactgtggaactccgtcggacgttgcagtctttagcatgtggcaagtttcgcgttatt
caaaaagtgccaaaagggaaagatgtgaacgaaaatgacacttttatttttaacgcaaat
ttcaccagtcccatgttgcgcatcaaaatcaatcagattcaatccaaagaaacgaacgaa
gaaaattttatgaccgtcgaacaggtgaacagcaacagagtgtttagcattgatgcggcg
attgttcgaattttgaaaactagaaaaacaatcagccattcagaattgatgtcggaaata
gtgcgacagttgcaattcagcgttcaagcttccgatgtgaagaagcgtatcgaaaatttg
attgaacgaagatttatcagtcgtgatgtgaaaaattcaagcaattacaattacatctcg
tag

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