Trichinella spiralis: Tsp_12500
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Entry
Tsp_12500 CDS
T01609
Name
(RefSeq) putative LSM domain protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tsp
Trichinella spiralis
Pathway
tsp03018
RNA degradation
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_12500
09123 Folding, sorting and degradation
03018 RNA degradation
Tsp_12500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_12500
03041 Spliceosome [BR:
tsp03041
]
Tsp_12500
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Tsp_12500
mRNA degradation factors
5'-3' decay
Lsm complex
Tsp_12500
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Tsp_12500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
10906356
NCBI-ProteinID:
XP_003367972
UniProt:
A0ABR3KHV5
LinkDB
All DBs
Position
Unknown
AA seq
92 aa
AA seq
DB search
MATPSTAVNPSTLLPLELIDKCIGSKLWIVMKGNKELVGTLLGFDDYVNIVLEDVIEYET
TTEGKRITRLDQILLNGTHIAMLIPGGEGPEV
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggccacaccttcgaccgcagtgaatccatccactcttctgccgttggaattgatcgac
aaatgcatcggatcgaaattgtggatcgtgatgaaagggaacaaagagttggtcggcacg
ttgcttggattcgacgactacgtgaacattgtcctggaagatgtgatcgaatacgagacc
actaccgaagggaaacgtatcaccagactcgatcagattctactcaacggcactcacatc
gccatgctaattcctggtggtgaaggacctgaagtttga
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integrated database retrieval system