KEGG   Trichinella spiralis: Tsp_12500
Entry
Tsp_12500         CDS       T01609                                 
Name
(RefSeq) putative LSM domain protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
tsp  Trichinella spiralis
Pathway
tsp03018  RNA degradation
tsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Tsp_12500
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tsp_12500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsp03019]
    Tsp_12500
   03041 Spliceosome [BR:tsp03041]
    Tsp_12500
Messenger RNA biogenesis [BR:tsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Tsp_12500
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Tsp_12500
Spliceosome [BR:tsp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Tsp_12500
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 10906356
NCBI-ProteinID: XP_003367972
UniProt: A0ABR3KHV5
LinkDB
Position
Unknown
AA seq 92 aa
MATPSTAVNPSTLLPLELIDKCIGSKLWIVMKGNKELVGTLLGFDDYVNIVLEDVIEYET
TTEGKRITRLDQILLNGTHIAMLIPGGEGPEV
NT seq 279 nt   +upstreamnt  +downstreamnt
atggccacaccttcgaccgcagtgaatccatccactcttctgccgttggaattgatcgac
aaatgcatcggatcgaaattgtggatcgtgatgaaagggaacaaagagttggtcggcacg
ttgcttggattcgacgactacgtgaacattgtcctggaagatgtgatcgaatacgagacc
actaccgaagggaaacgtatcaccagactcgatcagattctactcaacggcactcacatc
gccatgctaattcctggtggtgaaggacctgaagtttga

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