Trichinella spiralis: Tsp_12657
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Entry
Tsp_12657 CDS
T01609
Name
(RefSeq) spliceosome RNA helicase BAT1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
tsp03015
mRNA surveillance pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_12657
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_12657
03015 mRNA surveillance pathway
Tsp_12657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_12657
03041 Spliceosome [BR:
tsp03041
]
Tsp_12657
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tsp_12657
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Tsp_12657
Spliceosome [BR:
tsp03041
]
Complex C
Other components
EJC/TREX
Tsp_12657
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Tsp_12657
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
RNase_PH
Motif
Other DBs
NCBI-GeneID:
10910552
NCBI-ProteinID:
XP_003368629
LinkDB
All DBs
Position
Unknown
AA seq
640 aa
AA seq
DB search
MATLGHEELLDYEDEQEETVQHSKIADIQTDHHLEVVGGKKPVKGAYASIHSSGFRDFLL
KPELLRSIVDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVIATLQQLNAVEG
EVHCLVMCHTRELAFQISKEYERFCKYMPKVKVAVFFGGTNVKKDEDMLRNNTPHIVVGT
PGRLLALARNRVLSLKSIKYFILDECDRMLGDLDMRRDVQEIYKMTPREKQVMMFSATLS
KELRPVCKKFMQDPMEVYVDDEAKLTLHGLQQYYVKLKETEKNKKLFELLDVLEFNQVVI
FVRSVQRCMALNELLTEQNFPSIAIHRSMAQEERLSRYQQFRDFHKRILVATNLFGRGMD
IERVNIVFNYDMPEDSDTYLHRVNMNAFTLKIDVARAGRFGTKGLAITFVSDESDAKVLN
DVQDRFDVSIGELPDELDLKIVENWRRNFDELPNHRNRSYSRMLKKPAVIIETVVKKSHR
SANGSKLICNSSDVKREKKMSNNVTELEAEFRCTVRYVEDCTGSCLVSKRGTTLLISVHG
PTDVKASKQLPDSAVVQVHLTTVSKDEIGGRSSIDSEYLPVDNFGQAVAEATDHHRGARI
GKRWLLYGSGGQRSVHSFVGVGVADERHVRRKHVGLLRRC
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggctactctgggtcatgaagaacttctagattatgaagatgaacaagaagaaacagta
caacacagtaaaatagctgacatccaaacagatcaccatttagaagttgtaggtggaaag
aagcctgtaaagggcgcttatgcatcgatacatagttctggctttcgagattttttgcta
aagcctgaacttttgcgttccatcgttgactgcggtttcgagcatccttcggaagtgcaa
catgagtgcattcctcaagccattttgggaatggatgtcgtttgtcaagccaagtctggt
atgggcaaaactgcagtttttgtaattgcgacgttgcagcagttaaatgcagtcgaaggc
gaagttcactgtttagtgatgtgtcatacacgtgaactcgcgtttcaaattagcaaggaa
tacgaaagattttgcaagtatatgcccaaagtgaaagtggctgttttttttggaggaacg
aatgttaaaaaagacgaagatatgcttcgaaacaacactccgcatattgtagttggcact
cctggtcgtcttctggccttagctcgcaatcgcgttttatcattgaaatccataaaatat
tttatacttgatgaatgcgatcgcatgttgggagatctggatatgcggcgagatgtccaa
gaaatatacaaaatgacacctcgtgaaaagcaagttatgatgttttctgcaactctgagc
aaagaactgcgtcctgtttgcaaaaaattcatgcaagatccaatggaagtttatgttgac
gatgaagcgaaactgaccttgcatggtttacagcagtattacgttaaactaaaagaaact
gaaaaaaataaaaagttatttgagttgctagacgttcttgaatttaatcaagttgttatt
tttgttcgatcagtgcagcgttgcatggctttgaacgaattgttgaccgagcagaatttt
cccagcatcgctatacatcgttctatggcccaagaggagaggctctcgcgatatcaacag
tttagagattttcacaaacgaatcttggtagcaacgaatttatttggaagaggaatggac
attgaacgtgtgaatatcgtcttcaattacgacatgccagaagactcggacacatattta
catcgcgtaaacatgaatgcgtttacgctgaagatagatgtagcaagagctggtcgtttc
ggcaccaaaggtttggcaataacatttgtgagtgatgaatcggatgcgaaagtgctgaac
gatgttcaagaccgttttgacgtcagcattggcgaacttcctgacgaattggacttgaag
atcgttgaaaattggcgaagaaatttcgacgaattacctaatcaccgaaaccgtagttat
tctcgcatgttaaaaaaaccagccgtaattatcgaaacagttgttaaaaaatcacacaga
tcagcgaatggtagtaagttgatttgtaattcatcagacgtaaaaagagaaaaaaagatg
tcaaataacgtgactgaattggaggcagaatttcgttgcacagttcgctacgttgaagat
tgtactggatcgtgtttagtcagtaaacggggaacaactttgttgatcagtgttcacggc
ccgaccgatgtgaaagcttcgaaacagcttccagattcagcagtggtccaagtgcatttg
acgacagtatccaaagatgaaattggtggtcgaagctcgatcgacagtgaatatttgcca
gtcgataattttggtcaagctgttgccgaagcgactgatcaccatcgtggtgcaagaatt
ggaaagcgatggctgctttatggaagtggcggtcaacggtctgtgcatagctttgttgga
gtcggcgttgccgatgaacgacatgttcgccgcaagcacgttggcttattacggcggtgc
tag
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