Trichinella spiralis: Tsp_13171
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Entry
Tsp_13171 CDS
T01609
Name
(RefSeq) scavenger mRNA-decapping enzyme DcpS
KO
K12584
m7GpppX diphosphatase [EC:
3.6.1.59
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tsp_13171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_13171
Enzymes [BR:
tsp01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.59 5'-(N7-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase
Tsp_13171
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
Tsp_13171
3'-5' decay
Other 3'-5' decay factors
Tsp_13171
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_M3
DcpS_C
DcpS
Motif
Other DBs
NCBI-GeneID:
10899751
NCBI-ProteinID:
XP_003366212
LinkDB
All DBs
Position
Unknown
AA seq
348 aa
AA seq
DB search
MQILLSQANYSELASSDGIERDCIMIYSFFSEHLFMRPDCLADLSKHYRTNEKLSKNESA
NFIHAIREMQIPALVQNILLSEFDLLIHKSSMKFWFDIYRELSKQYFPYGWEKGDYLPCN
SSIVVDEQIASSYYRQLISDIIACDLISDIDENTQLNSAEFVNFCKNIHLAVAEQPDDDL
NALQLTLIQPASEQHIQKWSEEERCMVSETADDYRSITLQYIEKHKLSLQWVQNVLDGTA
ESERIVYNDPDPEVTIQERYGVPVNRLCIFFHYQPTYYHLHIHFTHLREATAGTSVGRAH
LYADVVDNLRSDSDYYAKRTMHFSLRNNDPLLHQLLGEGKQTTTKQDE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattttactttcacaagctaattattccgaactggcaagcagtgatggaattgag
cgtgactgtatcatgatttattcgttcttttctgaacatctattcatgcgaccggattgt
ttggccgacctgagcaagcattaccgtacaaatgagaaactttccaaaaatgaatcagct
aactttattcatgcaattcgagaaatgcaaattcccgcattagttcaaaatattcttctc
agcgaatttgacttgctcattcacaaatcatctatgaaattttggtttgacatttaccgt
gaattgtcaaaacagtatttcccatacggttgggaaaagggcgattatttgccttgcaac
agttcaatagtggtcgacgaacagattgcctcttcttattataggcagttgatatcagat
atcattgcgtgcgatttgatcagcgatattgatgaaaacactcagctaaacagtgcagag
tttgtgaacttttgtaaaaatatccacctggcggttgccgaacaaccggacgacgattta
aatgctttacagttgacactgatacagccagctagtgaacagcatatccagaaatggagc
gaagaagagcgttgcatggtttcagaaacggcggacgattatcgcagtatcactttgcag
tatatcgagaagcacaaactgagcttgcaatgggttcagaacgtactcgacggtacggct
gaaagtgaacggatcgtatacaatgatccagatccagaggtcactatacaagaacgttac
ggtgtaccagtgaatcgcttgtgcatctttttccattatcaaccgacttattatcatttg
catattcattttactcacctgcgtgaagcaaccgccggcacgtcggtcggcagagctcat
ctgtacgcagatgtggtcgacaacctgcgatcagacagtgactattacgccaagcgtaca
atgcacttttcactgcgaaacaacgatccacttttgcatcaattgttgggtgaaggaaag
cagacaacgacaaagcaagacgaatag
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