Trichinella spiralis: Tsp_13179
Help
Entry
Tsp_13179 CDS
T01609
Name
(RefSeq) putative HEAT protein
KO
K18752
transportin-1
Organism
tsp
Trichinella spiralis
Pathway
tsp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Tsp_13179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsp03019
]
Tsp_13179
03009 Ribosome biogenesis [BR:
tsp03009
]
Tsp_13179
Messenger RNA biogenesis [BR:
tsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Tsp_13179
Ribosome biogenesis [BR:
tsp03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
Tsp_13179
Pre-60S particles
Tsp_13179
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_EF3_N
TOR1L1_N
Vac14_Fab1_bd
TPR_IMB1
HEAT_GCN1
HEAT_2
Cnd1
HEAT_MROH2B_1st
MMS19_C
PDS5
TPR_IPO5
Motif
Other DBs
NCBI-GeneID:
10901210
NCBI-ProteinID:
XP_003371141
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MSPNSFFEKICYRLEILKAEQKFTKIVSDNISYSTSVMRRHSERFEMSFIFLLTTNNGCG
NERGRVSTSSRRTGPSVGIAEAVSDQRHCRPARSSEEVGRVEEDSDVFLLFVVRVDQNDR
RAAGDPLVGRSDIKKQYPRRLVDLHRRGETLRESRMRARVGRKQSNGSHYGRRGHCEHPE
SGEYTRLAGSCGQIARPAPQRPGSGRGRRVQCGAENMRRQRLLPGRGPRIRAAHLDAGSG
GAAVAPERESSPDVLAVGELFPRHTESIFGPLHRRPFSGSPVQLHERFGTVHSRLPVSGV
VVALQFVLQQADQLHALFLWPATYCTACEFWLTLAEEPANCREVVRPYLAELIPVLVRRM
RYSEQDLRNMKADLECDELIPDRAEDIQPRFRRSKPQQQQQDANSMSNVDDGINNIHSSN
VDANDHNNNDDDDDDDSVSGCDFSVDASSEWNVRKGSAATLDVLSNVFRDELLPHLLPIL
DGDLFQQDWLVKEAAILALGAVAEGCANGMAPHLPTLVPYLIGCLNDSKALVRSITCWTL
SRYGHWILQFPNERHFEQLLKELLGRLLDVNKRVQEAACSAFATLEEEANFELVPYLNEV
VQTLCAAFEKYQAKNLLILYDAVGTLAESIGTCLAKPELVDALMPPLMAKWNRTDDTERE
RYSLLECMASVVVALQDNFLPYSTSVFSRCVHLISCNVETATADLMLGSGSGSGSDTSSR
SRRPRVSSRRSGFRD
NT seq
2206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgaattcattctttgaaaaaatatgttaccgcctagaaattttgaaggcagaa
cagaaattcacaaagattgtatctgataatatttcatattctaccagtgtgatgcgacga
catagtgaacgattcgaaatgtccttcatatttttgctaacaacaaacaatggctgtgga
aatgagcgcggcagagtttcaacctcaagccgacgaactggcccaagtgttggaattgct
gaagcagtctcagatcagcgacactgccgtccagcgagaagttcagaagaagttggaaga
gttgaagaagattccgacgttttcctattatttgttgtacgtgttgaccagaatgaccga
cgagcagcaggtgacccgctcgttgggcggtctgatattaaaaaacaatatccacgccgc
ttggtcgacttacaccgacgaggcgaaacgctacgtgaaagccgaatgcgtgcacgcgtt
gggcgaaagcaatcaaatggttcgcactacggtcgacgtggtcattgcgagcatcctgag
tcaggagagtatacacgcttggccggatcttgtggtcaaattgctcgaccagctccacag
cgaccaggatcaggtcgtggtcggcgcgttcagtgtggtgcagaaaatatgcgaagacag
cgccttctaccaggtcgaggaccgcgaatacgcgctgcgcaccttgatgccggctctggt
ggggctgctgttgcaccagaacgtgaaagttcgcctgatgtgcttgcagtcggtgaactt
tttcctcggcatacggagtccatttttggaccacttcatcgacgaccgttttctggctcg
cctgttcaactgcatgaacgattcggaacagtccattcacgattgcctgtgtcaggcgtt
gtcgttgctttgcaatttgtacttcaacaagctgaccaactacatgccctttttttgtgg
cccgctacatactgcacagcgtgcgaattttggctcacgctggccgaagagccggccaat
tgccgcgaagtggtcaggccttatttggcggaattgattcctgttcttgtgcgacggatg
cgctattcggaacaagatttgcgcaacatgaaagccgacttggaatgcgacgaactaatc
ccagaccgtgccgaagatattcagccgagatttcgtcggtccaagccacaacaacaacaa
caagatgcgaattccatgtccaacgtggacgatggaattaataatattcacagcagtaac
gtggatgcaaatgaccacaacaacaacgacgacgacgacgacgacgatagcgtcagtgga
tgcgatttttcggtcgacgcgtcgtcagaatggaacgtacgcaaaggatccgcggcgacg
ttggacgtgctgtcgaacgtgttcagagacgagctgcttccgcatttgttaccaattttg
gacggcgatctgttccaacaggactggctggtcaaagaggcggccatattggcgttgggc
gccgtggccgaaggctgcgcgaacggcatggcaccccacttgcccactctggtcccctat
ttgatcggttgtttgaacgattcgaaagcgttggtcaggtcgatcacttgttggacgttg
agtcgttatggtcattggatattgcaatttccgaacgaacgccatttcgaacagttgctc
aaagaactgttgggtcggctgttggacgtgaacaagcgagtccaggaggcggcgtgcagc
gcgttcgccacgctggaagaggaggcgaatttcgaactggtcccatatttgaacgaagtg
gtgcagacgttgtgcgccgcgttcgaaaaataccaggcgaaaaatttgctcatactgtac
gacgcggtcggcacgctggccgaatcgatcggcacttgtctcgccaaaccggagctggtt
gacgcgctgatgccgcccctgatggccaaatggaaccgcaccgacgacaccgaacgggaa
cgctattcgctgttggaatgcatggccagcgtggtggtcgcgttgcaggacaattttctc
ccctattccacgtcggtattttcgcgctgtgtccacttgatcagttgcaacgtcgaaacg
gcaacggccgatttgatgctcggctccggctctggatcgggatccgacacatcgtctcgg
tcccgtcgacccagggtgtcgagtcggcggtcaggatttcgtgatc
DBGET
integrated database retrieval system
