Telmatocola sphagniphila: KIH39_03645
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Entry
KIH39_03645 CDS
T07229
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tsph
Telmatocola sphagniphila
Pathway
tsph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIH39_03645 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsph03021
]
KIH39_03645 (rho)
03019 Messenger RNA biogenesis [BR:
tsph03019
]
KIH39_03645 (rho)
Transcription machinery [BR:
tsph03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KIH39_03645 (rho)
Messenger RNA biogenesis [BR:
tsph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KIH39_03645 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
Spore_III_AA
DUF3086
Rho_N
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QVL34836
UniProt:
A0A8E6BBR7
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All DBs
Position
850147..851373
Genome browser
AA seq
408 aa
AA seq
DB search
MPKLFAMAEKEGLGEHTGMTRAQLIVGIVRRQIERGEVVRGSGTLEVLPDGYGFLRSQAH
NYLASPEDIYVSPSQIRRMNLKTGLIVEGPIRLPVEGQDNFAIMQVETVNGVAPDEQTNI
TQFDDLTPLHPNSRLVLESDSNELSARIVDLVTPIGKGQRGLIVSPPRAGKTVLLQKMAL
SILKNQPETYVIVLLIDERPEEVTDMQRNVQGPNVEVVASTFDEPPEEHIHVSEIVLEKA
KRMVERKRDVVILLDSITRLARAHNTEAPGGGKLLSGGLDSNAMQKPKRFFGAARNVEEG
GSLTILATALIDTGSKMDDVIFEEFKGTGNMELHLDRRLVDKRIWPALDVNRSGTRKEEL
LLHPEEMERMRILRRVLSDMHPVEAMEMLVSKVRKTKTNMEFLIGMHL
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcttttcgccatggccgaaaaggaaggactgggcgaacatacggggatgacc
cgagctcagctcattgtgggcattgtccgacgtcagatcgaacgtggcgaagtggtgcga
ggctccggcaccctggaggtcctgcccgatggctacggcttcctgcgcagccaagcccac
aattacctggcttccccggaagatatttatgtatctcccagccagattcgacgcatgaac
ctgaaaaccgggttgatcgtcgaaggtccaatccgcctgccggtcgaaggacaggacaac
ttcgccatcatgcaggtcgaaaccgttaatggcgtggctccggacgaacagaccaatatc
actcagttcgatgacctgactcccttgcatcccaacagtcgtctggtcctcgaatccgat
tcgaatgaactgtcggctcgaattgtcgatctggtcaccccgatcggtaaaggccagcgc
ggtttgatcgtgtcaccgccgcgagcaggtaaaaccgtgctgcttcagaagatggccttg
tccattctcaagaaccagccggaaacctacgttatcgttttattgattgacgagcgtccc
gaagaagttaccgatatgcagcgtaacgttcaggggccaaatgtcgaagtcgtggcgagt
acattcgacgagccgcccgaagagcatattcacgtcagcgaaatcgttctcgaaaaagcc
aaacgcatggtggaacgaaaacgcgacgtggtcattcttctcgactcgatcacccgtctg
gcccgcgctcataataccgaagctccgggcggcggtaaactgctctctggtggtctcgat
tccaacgcgatgcagaaaccgaagagattcttcggggcggcccgtaacgtcgaagaaggg
ggttcgttgacgatcctggccacggctctgatcgacaccggctccaagatggacgatgtg
attttcgaagagttcaagggcaccggtaacatggaattgcacttggatcgccgactcgtc
gacaagcggatctggcccgctctggatgtcaaccgctccggtacccgcaaggaagaacta
ctgctccatcccgaagagatggaacggatgcgaattctccgccgggtactctccgatatg
cacccggtcgaagcgatggaaatgctcgtcagcaaggtccgcaagaccaagacgaacatg
gaattcctcattggcatgcatctgtaa
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