Telmatocola sphagniphila: KIH39_05560
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Entry
KIH39_05560 CDS
T07229
Name
(GenBank) tetratricopeptide repeat protein
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tsph
Telmatocola sphagniphila
Pathway
tsph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIH39_05560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsph03021
]
KIH39_05560
03400 DNA repair and recombination proteins [BR:
tsph03400
]
KIH39_05560
Enzymes [BR:
tsph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIH39_05560
Transcription machinery [BR:
tsph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIH39_05560
DNA repair and recombination proteins [BR:
tsph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIH39_05560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_8
TPR_2
TPR_14
TPR_1
TPR_6
TPR_16
TPR_19
TPR_7
TPR_17
ARM_TT21_N
TPR_12
TPR_11
TPR_CcmH_CycH
ANAPC3
T7SS_EccA1_N
TPR_9
TPR_15
ARM_TT21_2nd
Iml2-TPR_39
TPR-S
HAT_PRP39_C
TPR_Slam
TPR_10
PknG_TPR
SNAP
ARM_TT21_C
FAT
IMS_HHH_1
HTH_ParB
Motif
Other DBs
NCBI-ProteinID:
QVL33381
UniProt:
A0A8E6B923
LinkDB
All DBs
Position
complement(1323424..1324755)
Genome browser
AA seq
443 aa
AA seq
DB search
MDAVIDLKALLVEREDCDAGTVQKLREGLAQGGNQFKSLREVTQLLAKKIESSPPAVAKK
LHLKLGIANYFLGFMNQSAENLKHAEVPLGYFYHGRALANLQQHEEALKALDRAEKSGYS
APQVQLQRANVYRLKGDWTHARSILSKLEELASHSAEFHYQSALCTLAEGDKAKALKSLE
KAIEFDPGHTGALFQLGYFNDLSGNDHEAISFYERCLKYPPVHKGTLNNLGVLYEDNAKY
DKAVECFNRLLQADPNDDRARLFLKDASASLTMHYNPEEEQSSTIFRQVLEVPVTDFELS
VRSRNCLKKMGIRTLGDLTRITEASLLASKNFGETSLDEIKNIMGAKGLRIGQSLEQGMQ
YEMRYRPQQQLSPEEQAMMNKPVSDLNLSVRARKCMNRLSILTIGELVSRTADELLEAKN
FGQTSLTEIREKLTELGIKLRGD
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
gtggatgccgtgatcgatttgaaagctctattggtcgaacgggaagattgcgatgccgga
accgtgcagaaattgcgcgagggcttagcccagggcggcaaccaattcaagagtctgcgg
gaagtgactcaactactggccaagaagatcgaatcttcgcccccagccgtggcaaaaaaa
ctccaccttaagttgggtattgccaattatttcctcggtttcatgaatcaatcggccgaa
aatctcaagcacgcagaagtgcccttgggatatttctaccacggccgcgcactggcgaat
ctgcagcagcacgaagaagctttgaaagccctggatcgagcggagaaatcgggctattcc
gccccacaagttcaactgcaacgggcaaacgtctatcgcttgaaaggcgattggactcac
gcccgatcaattttgagcaaactggaagaactcgccagccacagcgcggaattccactac
cagagtgcactgtgcaccctggcggaaggggacaaggctaaagctctgaaatcgcttgaa
aaagcgattgaattcgatcccggtcataccggtgccctcttccaactcggctacttcaac
gatctttcgggcaacgaccacgaagccatcagcttctacgaacgttgcttgaagtatcca
ccggtacacaaaggcacgctgaataacctcggcgttctttacgaagacaacgccaagtac
gataaagccgtcgaatgcttcaatcggttacttcaggccgatcccaacgatgatcgtgcg
cggttattcctgaaggatgcgtccgcttcgctgacgatgcattacaatcccgaggaagaa
caatcctcgacgatcttccggcaggtactggaagttccggtaaccgatttcgaactctcc
gttcgcagccggaactgtctgaagaagatgggaattcgaacgctcggcgatttgacccgt
atcaccgaagccagccttctggccagtaagaatttcggcgagacatcgctcgacgaaatt
aagaacatcatgggcgccaaaggcctgagaatcggccagtcccttgaacagggcatgcag
tatgaaatgcgctaccggccgcagcagcagttgtcgccggaagagcaggcgatgatgaac
aagccggtcagcgatctcaacttgtcggttcgggcacgcaagtgcatgaatcgtctatcg
attctgaccatcggcgaactcgtctcccgtaccgccgatgagttgttggaagccaagaac
ttcggtcagacttcattgactgaaatccgagagaaattgacggaactcggtatcaaatta
cgcggcgactga
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