Telmatocola sphagniphila: KIH39_05840
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Entry
KIH39_05840 CDS
T07229
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
tsph
Telmatocola sphagniphila
Brite
KEGG Orthology (KO) [BR:
tsph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsph03400
]
KIH39_05840
Enzymes [BR:
tsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KIH39_05840
DNA repair and recombination proteins [BR:
tsph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KIH39_05840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QVL33433
UniProt:
A0A8E6B7R3
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All DBs
Position
1392771..1395902
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AA seq
1043 aa
AA seq
DB search
MNYRVKLVSLKVEPANLAKILPESMIRTQGVGEIVWLSSHVSQCGYNLQLVQSSEIVFRE
HISFQSIEEYAHKVLNPARPLDLAGFRSVFKLLLNAALRSLSGRKQNSSNDRQMASPGFA
QAVSQTFDLLDLNSHPISIPCLDLLPPVYRRLLEQSGYRDARIFNWKGPLEKPNLPCELV
VDGDSAVAMRWEGFIGFLAQNTNLTLVCRERDQALFWARKFSLPESAIPASKLKVSKTIA
HVNSQLFKSDPKKLNSAKGIELIQAPAELGEARLIARRIAQLIEKSVAPERILIGLHKQP
GKADLILSTLRQYSIPVSSLYCGNYQRVPAIRALLNFLNIPAAGWQFRQIAMLLRSNFFR
PEWEEISSERKFLREAELFLRYLGEPSGREAFEQGLQTWSVSPPQPLEDEEMEGYERTRM
QSIATRSQSFFRNLFDLLDSAPRQATFAEYANWLQRFAREFGFEKALLPHPAELEKWHAF
FEIFQQLPKTTRTWNKTEFFELISELANCSTSPETTAQTVRILEANEAVHLDCDYLFLAG
LAEGSFPNLNRTKTLLNHEQLKQLASEGAPLPEPDTDLEVEQDLFRRLLATPKKGVILSY
PALDNSGQPLLPATFVGNLLDCFEPEVVETTAQSMLLSGFFESTPYANFERRCQFVARSR
SRIDKVDWSWGGRTSQTLQRAAVMAESRFRSKNHNEYDGMIASPKVTSKLEKKFGNSKIF
SPTALERYVSCPFRFWMQDALGFRELEEPNEDIEVWQRGMAFHRAIARLHRTILSKTAVD
PKSEEFRKHLQSELNRAILENASKSASLFTRKLWELEGNRLLRLTRNYGTQWAEFQSGWM
KSTGVPQPLYLERAFGTRRIDLLSNDTENPPLSIGTGEAAIKLGGVIDRVDSVQLSDGLV
FWVIDYKTGTPNHYTPKMFESMERLQLTLYALAAQTLFFQNQNARPLGLAYWFVAHHEGL
KTVFPKQKKKGSDPVPMSLEEWNQYRKRLENWVGEIVKRIRSGLFPLAPRNKENCSHCPY
SQSCRISESRDRKEDWKFDPPET
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaattatcgcgtcaagctcgtgagtctgaaagtcgagccggctaatctggcaaagatt
ctgcccgaatcgatgatccgaactcagggtgtcggtgaaatcgtatggttgtccagtcat
gtcagtcagtgtggctacaacctgcagctcgttcaatcgagcgagattgtgttccgtgaa
catatttcatttcaatcgatagaggaatatgctcacaaagtgctcaatcccgctcggcca
ctggatctcgcaggatttcgaagcgtctttaagcttctgctcaatgcagcattgagatcg
ctatctggccgaaagcagaattcttccaacgatcgacagatggctagtcctggctttgcc
caggccgtcagccagacttttgatttgctggatctgaattctcatccgatttcaattccc
tgtctcgatttattgccgccggtttaccggcgacttctagaacaatcgggctatcgggat
gcacgaatttttaattggaaaggtcctctagaaaagcccaacttaccgtgtgagctggtt
gttgatggggattctgctgtcgctatgcgttgggaaggattcatcggctttctagctcaa
aacactaacttaacgctggtttgccgtgaaagagatcaggccttattttgggcgcgaaag
ttttctctaccggaatcagccattccggcctcgaaattaaaagtttcgaaaacgattgct
cacgtaaattctcagttattcaagtctgatccgaaaaaattgaattccgccaaaggaatt
gaattgattcaggcgccggccgagttgggtgaggcacgcttgattgctcgccggattgct
cagttgatcgagaaaagtgtcgctcccgaaaggattttaatcggcctccacaagcagcct
ggcaaagccgatttaattctctcgacgctccggcaatacagtattccggtcagcagcttg
tactgcgggaactatcagcgtgttcccgcgattcgggcactgctgaattttttgaacatt
cccgcagcgggctggcaattccgacagattgccatgctattgcgatccaacttttttcgg
ccggaatgggaagagatttccagtgagagaaaatttttgcgtgaggcggagttgtttctc
cgatatctcggggaaccaagcggccgagaagcttttgagcaaggacttcaaacctggtcg
gtcagtcccccgcaaccgttggaagatgaggaaatggaaggttacgagcggactcgcatg
cagtcaattgcaacccgctcgcagtctttctttcgcaatttgttcgatctgctcgattct
gctcccagacaagcgactttcgcggaatatgcgaattggcttcagcgctttgctcgggaa
ttcggttttgaaaaagctttattaccgcaccctgcggaacttgaaaaatggcatgcgttc
tttgagattttccagcagttgccaaaaactactcgcacttggaataaaaccgaatttttc
gaattgatttcggagctggcgaattgctctacaagcccagaaactacagcccagacagtc
cggatactcgaggccaacgaagccgttcatctggattgtgattatttgttcctggcgggc
ttggcggaaggttcctttcccaatctcaatcgaactaaaacacttctcaatcacgagcaa
cttaaacaattagctagcgaaggtgcaccattacccgaaccggacacggatttagaagta
gagcaggatcttttccggagactgctagctactccaaaaaagggggtcattctctcctac
cctgccttggataattcgggtcagccgttgttgcccgccacttttgttggcaacttgctc
gattgttttgaaccggaagttgtcgagaccaccgcgcagtcgatgctgctctccggattt
ttcgaatcaaccccttacgcaaattttgagcgacgatgtcaatttgtcgcacggtcgagg
tcgagaattgataaagtggattggtcttggggcggtcgcacgtctcagactcttcagcgt
gcggctgtaatggccgaatctcgcttccgatcgaaaaatcataacgaatacgatgggatg
attgcctctccgaaggtcacctcgaaattagaaaaaaaattcggtaactccaaaatcttc
agtcccacggccttggaacgctacgtcagttgtccctttcgtttctggatgcaggatgcc
ctcgggttccgggaactcgaagaacccaatgaggatatcgaagtctggcaacgggggatg
gcctttcaccgggcaatcgcccgattgcatcggaccatcttgagtaagaccgcggtggat
ccgaaatccgaggagtttcgaaagcaccttcaaagtgaactgaaccgggccatactcgaa
aatgcatcgaaatcggccagcttgttcactcgcaagctttgggaactggaaggcaatcga
ttgcttcgtttgacacgaaattacggaacgcaatgggcggaatttcagtcaggttggatg
aaatccaccggggttccacaacctctctatctggagcgagcttttggtaccaggcgaatc
gatcttctcagtaatgacaccgagaacccgccgttgtcaattggcaccggagaagctgcg
atcaaacttggtggtgtgatcgatcgcgtggattcagttcaactgtcggatgggttagtc
ttctgggtaatcgattataagaccggcactccaaatcactacaccccgaagatgttcgaa
agcatggagcggctgcaattaacgctctatgcgctggccgcgcagactttgttctttcag
aatcagaatgctcggcccctgggactggcctattggttcgtcgcccaccacgaaggcttg
aaaacggttttccccaaacagaaaaaaaagggttccgatccggttcccatgtccttggag
gaatggaatcagtaccgcaaaagactggaaaattgggtcggggagattgttaagcgaatc
cggagcgggttattccctcttgcaccacgaaataaagagaattgcagccactgcccgtat
tcccaatcttgccggatcagtgagagccgggatcgcaaagaggattggaaattcgatcct
cccgagacttga
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