Telmatocola sphagniphila: KIH39_13495
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Entry
KIH39_13495 CDS
T07229
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tsph
Telmatocola sphagniphila
Pathway
tsph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIH39_13495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsph03019
]
KIH39_13495
03009 Ribosome biogenesis [BR:
tsph03009
]
KIH39_13495
Enzymes [BR:
tsph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KIH39_13495
Messenger RNA biogenesis [BR:
tsph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIH39_13495
Ribosome biogenesis [BR:
tsph03009
]
Prokaryotic type
rRNA processing factors
KIH39_13495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Cytochrom_C550
Motif
Other DBs
NCBI-ProteinID:
QVL29884
UniProt:
A0A8E6ERZ5
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All DBs
Position
3402890..3405631
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AA seq
913 aa
AA seq
DB search
MKKEMLINVLQPEECRIAILEDGVLEELYLERASQESYVNNIYKGRIVNIESSIQAAFID
FGIGRNGFLHVSDVDPIYYQHLLKDYPEAAGDDEDDFEPQPRNDRGGRDRDRGERNDRGG
RNDRGDRNERGGRDRRDRDDRPRERQQPAPLAHTPPPPAHTISIIPVEIPVPEHRPEPSS
VAPPPASPEVVEESVFDDFGAGIDFDAPNHPSTHSTESDYGQHSDGSNPAGTENGTDESA
GEESKPRRRRTAKRPEKKEDAGEAKAPRKRARARKKSDEGETPSDDTMPAAEHRTTEGEE
SGFGGGIFFDPDAPNDRFVEPTRSAPPVTHTPHAEQLPPAAEEFEDEEIFEDAEIVEGDS
DEGSVEQETSFDRPDRNQRNDRNDRGDRGDRNDRGDRRGDRNDRGQRGGRDRGPRKFSRD
GNIGPKPPIEQIFKRGQEVIVQVIKEGIGTKGPTLSTYISIAGRYLVLMPSLNRLAVSRK
IEDVPTRSRLKESLSELNPPKGIGFIIRTAAIDRNKKELQNDLAYLVRLWEVFVSRVKKK
PGPVEIYRESDIVIRTIRDNFTSDIETIHIDEPNAFTAASEFLKFVMPRYAERIKLYDDV
EPLFHKYKIEAEIAKLQEKKLPLPMGGSIVIEQTEALVAIDVNSGNFRSETNAEETAYKM
NLQAAKEIARQLRLRDMGGVIVNDFIDMKEEKHRRAVENALRDALSRDRARTKILKTSAF
GVIEMTRQRIRPSLKRSTHQECAHCRATGSVKTPESMSIEIIRLIQLAAFRKNIQQLNAY
VHPDVAQYLLNRKRRDLIRWEETSNMQILVHGKPQVSPEFVEFHCFDSNGTEIHFSTSPV
VAPAPVRTEPRNDREERWSEDRGGRDNRDNRDNRDNRDNRGGGRDHRGGGGDRRGGGGRD
SRGGNRGGGRGRN
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagaaatgctaatcaacgtcctccaaccggaggagtgccgtatcgccatactg
gaagacggtgtgctcgaagaactttacctcgagcgggccagccaggaaagctacgtcaac
aacatctacaaaggccgaatcgttaacatcgaatcgagcattcaagccgcgttcatcgac
ttcgggatcggtcgcaacggcttcctgcacgtctcggatgtggacccgatttattatcag
catctgctgaaagattacccggaagccgctggtgatgacgaagatgatttcgaaccgcag
ccgcgcaacgaccgcggcggtagggatcgcgaccgaggcgaaagaaacgaccgcggcggc
cgcaatgatcggggagatcgaaatgagcgcggtggacgggatcgacgcgatcgggatgac
cgtcctcgcgaacgtcagcaacccgcgccgctggctcacacacctccccctcctgcccac
accatttccatcattcccgtggaaatccctgtgcccgagcacagacccgagccaagcagc
gttgccccacctccggcgagcccggaagtagtggaagagtccgtattcgatgatttcggc
gccgggattgatttcgatgcccccaatcatccgtcgacccattccactgagtcggactac
ggtcagcattcggatggctcgaatccggcaggtaccgaaaatggaacggacgagtcggcg
ggcgaagaaagcaagccacgccgtcgccgaacggccaagcgacctgaaaagaaagaagat
gccggggaagccaaagctccccgcaaacgggcccgcgctcgtaagaaatccgacgagggc
gaaactccttccgacgatacaatgcctgcggcagaacatcgaacaaccgaaggtgaagaa
tccggtttcggtggtggaattttcttcgatcccgatgcccccaacgaccgatttgtagaa
ccgacccgttctgcaccgcccgttactcacacaccgcacgccgagcaattgcccccagcc
gccgaagaattcgaagatgaagaaattttcgaagatgccgaaatcgtcgaaggggattcg
gacgagggatccgtcgaacaagaaaccagtttcgaccgaccggatcgcaatcaacgaaat
gaccgtaacgatcgaggagatcggggagatcgaaatgatcgcggtgatcgtcggggagat
cgaaatgaccgcggccagcgcggcggtcgggaccgcggcccacgcaaattcagccgggat
ggcaacatcggccccaaaccgccaatcgaacagattttcaaacgcggccaggaagtgatc
gttcaggtcatcaaggaaggcatcggcaccaaagggccgaccctttcaacctacatcagc
attgccggtcgctacctggtattgatgcccagtctgaatcgactggccgtttctcgcaag
attgaagacgtcccgactcgttcccgcctgaaagaatcgctttcggaactgaatcctccc
aagggaatcggattcatcattcgaacggcggctattgatcgaaacaagaaagaattgcag
aacgatctggcttacctggtccgtctctgggaggtcttcgtcagccgagttaagaagaaa
ccggggcccgtcgaaatttatcgcgaaagcgatatcgtcattcggaccatccgggacaat
ttcaccagcgacatcgaaacgattcacatcgatgagccgaatgcgtttactgcagccagt
gaattcctgaaatttgtgatgcctcgatatgccgaacgaattaagctctacgacgatgtg
gaacccctgttccacaagtacaaaatcgaagcggaaatcgccaaattgcaggagaagaaa
cttcccctgccgatgggcggttcgattgtgatcgagcaaaccgaagccctggtggccatc
gatgtcaacagcggcaacttccgatcggaaacgaacgctgaagaaacggcctacaagatg
aatcttcaggccgctaaggagattgcccgccagttgcggctacgcgacatgggtggcgta
atcgtcaacgacttcatcgatatgaaggaagagaagcatcgccgggctgtggaaaatgct
cttcgcgatgccttgtcgcgagatagggctcgcacgaagattctcaaaacttctgcgttt
ggcgtcattgagatgactcgccagcgaattcggccttcgctgaagcgcagcacgcatcag
gaatgcgcccactgccgggccaccggaagtgtgaaaacaccagagagtatgagcatcgag
atcatccgcctgattcagttggccgctttccggaagaacattcagcaattgaatgcctac
gttcatccggatgtggctcaatatctcctgaatcgcaaacggcgggatctgatccgctgg
gaggaaacttccaacatgcagattctggtccacggcaagcctcaggtatcgccggaattc
gttgaattccactgtttcgacagcaacggcacggaaatccatttcagcaccagtccggtg
gtagcgcctgcaccggtccgaacggaaccgcgaaacgatcgcgaagaacgctggtcagaa
gatcggggcggacgggacaaccgtgataaccgtgataaccgcgataaccgggacaatcgg
ggaggcggccgggatcatcgaggaggcgggggagaccgacgtggcggcggaggtcgcgat
agtcgcggcggcaatcggggcggcggccgaggccgcaattag
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