Telmatocola sphagniphila: KIH39_26100
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Entry
KIH39_26100 CDS
T07229
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
tsph
Telmatocola sphagniphila
Brite
KEGG Orthology (KO) [BR:
tsph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsph03019
]
KIH39_26100
Messenger RNA biogenesis [BR:
tsph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIH39_26100
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Paralog
GFIT
Motif
Pfam:
HD
TraI_2
Ppx-GppA_III
PaaA_PaaC
OB_YrrC
Motif
Other DBs
NCBI-ProteinID:
QVL32263
UniProt:
A0A8E6B5E0
LinkDB
All DBs
Position
complement(6506091..6507104)
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AA seq
337 aa
AA seq
DB search
MASPLVRLFEMQPNQVGEFFALLTERQKSESRDRKPYFLCRFKDAKRTAGTLIWSDSFHF
DDCEKTWQIGRFYRLRAKYIDHKEFGSQIELLGLRPVNEKDRREGFTEIEYIERYRKPPE
EAFSALCSLASERLLDTSLKNLVLYLLETHREALLRLPASPKHYYPFAGGWLEHTLRVAE
HSLILAERYRTIYADSQPPLNTDIVLAGAILHEIGRAVELRPSPEFFDWTETTIEGRLAG
HSILGRDLVRQAGALFPELHPHLLKLLEHVVLAHLALPEWGSPRLPAVPEVLIVHHADDL
DAKMEMFQRCLRNDPSSRDFTERDPILGRQLWKSREV
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
ttggcatcgcccctggtccgccttttcgaaatgcagcccaatcaagtcggcgaatttttc
gctcttctcacggagcgtcaaaagagcgaatcgcgcgaccgcaagccctacttcctctgc
cgattcaaggacgccaagcgcaccgccggaactctgatctggagcgattcttttcacttc
gacgattgcgaaaaaacctggcagatcggtcgattctaccggttgcgggccaaatacatc
gatcacaaagaatttggttctcagatcgaactgctgggccttcgtcccgttaacgaaaag
gaccggcgggaaggtttcaccgaaatcgagtacatcgagcgttatcggaaaccgcccgaa
gaagctttttctgcgctgtgctccctcgcgtcggaacggctactcgatacttccctgaaa
aatctcgttctttatctgcttgaaacccatcgcgaggccttgctgcgcctgcccgcctcc
ccgaagcactactacccctttgccggcggttggctggaacatactctgcgcgtcgccgag
cacagtctgattctggccgagcggtatcgaacgatctacgccgactcacaaccgccgttg
aataccgacattgtgctggccggagcaatcttgcatgagatcggccgggccgtggaactt
cggcccagtcccgaatttttcgactggacggaaaccaccattgagggacgactggcggga
cattccattctcgggcgggatctggttcgtcaggccggcgccctctttcccgaactccat
ccgcacttactcaagcttctcgaacatgtcgtgctggctcatctggccctgccggaatgg
ggctcgccgcgattgcccgcggttccggaggtcttgatcgttcatcatgcggacgatctg
gatgcgaaaatggaaatgtttcagcgctgtctgcgcaatgatccaagttcccgcgacttc
actgagcgggatcccattctgggacgacaactctggaagagccgggaagtgtag
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