Thalassovivens spotae: UM181_02065
Help
Entry
UM181_02065 CDS
T11788
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tspo Thalassovivens spotae
Pathway
tspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UM181_02065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tspo03021
]
UM181_02065 (rpoC)
03400 DNA repair and recombination proteins [BR:
tspo03400
]
UM181_02065 (rpoC)
Enzymes [BR:
tspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UM181_02065 (rpoC)
Transcription machinery [BR:
tspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UM181_02065 (rpoC)
DNA repair and recombination proteins [BR:
tspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UM181_02065 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
DUF6241
Motif
Other DBs
NCBI-ProteinID:
WQC63420
LinkDB
All DBs
Position
complement(398120..402337)
Genome browser
AA seq
1405 aa
AA seq
DB search
MNQELTNNPFNPLTSPKVFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPTKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDTFGMDAFT
ANIGAEAIREMLAAIDLESEAEQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
ILTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIMREGMKGEGMMFSSIEEVQYAL
DSGTVHLHAKITARIPQIDEHGSEVMQRFETTPGRVRLGALLPVNNKAPFELVNALLRKK
DVQKVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDDKWGIVDTTRQ
QVKDFEQQYMDGLITQGEKYNKVVDSWSKCNDKVTDAMMNTISAPRLDDDGSESEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMNDCGTEQSITAETAVNDGEVVSSLAERVLGRV
AAEDILRPGTEDMLVAKGELIDEIMADKIDEAGLQTARIRSPLTCEAEEGVCALCYGRDL
ARGTIVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQSGVIEFENPQ
TLKNAQGDMLVMGRNMKLRILDENGDELASHKLGYGTKLFVAEGAKVERGDKLFEWDPYT
LPIIAEKAGVAKHVDLANGVAVREETDDATGMTQKIVIDWRAAAKGSELKPEIILAGEDG
EPVRNEAGNPITYPMSVDAILSVEDGQEVKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEVDGYVRFGRDYKNKRRISIEPADESLELVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAIMGIEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IAESGDTTLLKGEHVDKAEFDAANEKALSKGGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQQVRRIATERDNVVLEARRE
EAQAAAALAAPSEDDVFKEATASES
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgtttaacccgttaacgtcacctaaagttttcgat
gagatcaaagtctctttggccagcccagagcggatcctttcatggtctttcggtgaaatc
aaaaagcccgaaacgatcaattaccggacctttaagcccgagcgtgatggtttgttctgc
gcgcgaatttttggcccaaccaaagattacgaatgtctgtgcggcaaatataaacggatg
aagtatcgtggcgttgtctgcgaaaaatgtggcgttgaagtgacgctgcagaaggtccgc
cgggaacgtatggggcatatcgaactggcctcacccgttgcacatatttggttcttaaag
tcgctgccatcgcggattggcttgatgctggatatgacgcttcgtgatttggaacgcgtg
ctgtattttgaaaattatgtggtgatcgagcctggtctgaccgatttgacctatggtcag
atgatgaccgaagaagaatatatggacgcgcaagacacgttcggtatggatgcatttacc
gccaatatcggtgcagaagcgatccgcgaaatgctggcggcgatcgatttggaatctgaa
gccgagcaattgcgcgcggatctcaaagaagccacgggtgagttgaagccgaaaaaaatc
atcaagcgcctgaaagtggttgaaagctttttggaatcgggcaaccgcccggaatggatg
atcctcactgttgtgccggtgattccgccggagttgcgccccttggtgccattggatggc
ggccggtttgcaacgtcggatttgaacgatctttatcgccgtgtgattaaccgcaacaac
cgtttgaagcgactgatcgaattgcgcgcgcccgatattatcgtgcgcaacgaaaagcgg
atgctgcaggaatctgtggatgcgttgttcgacaatggccgccgcggccgcgtgatcacc
ggtgccaataagcggccgctgaaatcgctgtcggacatgctgaaaggcaaacagggccgt
ttccgtcaaaacttgcttggaaagcgggtcgatttttctggccgttcggtgatcgtgacg
ggcccagagctgaagctgcatcaatgtggcttgcctaagaaaatggcgctcgaattgttc
aagccgtttatctattcgcgccttgaggccaaagggctgtcaagcacggtgaagcaagcc
aaaaaactggttgaaaaagagcgtcctgaagtatgggatattctggatgaagtgatccgc
gagcacccggtaatgttgaaccgtgcgcctactttgcaccggttgggcattcaagctttt
gagccggttttgatagaaggcaaagccatccaattgcatccgctggtctgttctgcgttc
aacgctgattttgacggtgaccaaatggccgtacacgtgccgctcagcttggaagcccag
ctagaagcccgcgtgttgatgatgtccacaaataacgtgctgtcaccagcaaatggcgcc
ccgattatcgtgccctcgcaggatatgattttgggtctgtattacaccacaatcatgcga
gaaggcatgaagggtgaagggatgatgttcagctcgattgaggaagtgcaatacgctctc
gatagtggcactgtgcatttacatgccaaaatcactgcgcgtattccgcaaatagatgag
catggcagcgaagtgatgcaacggtttgaaaccactccggggcgcgtgcgcctgggcgct
cttttgccggtgaataacaaagcgccgtttgaattggtgaacgcgttgctcagaaagaaa
gatgtccaaaaggtgatcgacactgtctaccgctattgcggtcagaaagaatcggtaatt
ttttgcgatcaaattatgacgatgggcttcagagaagcgttcaaagccggtatctcattc
ggcaaggatgatatggttatcccagatgataaatgggggatcgttgatacgacccgtcag
caggttaaagatttcgaacagcaatatatggatggtctgatcacacagggcgagaaatat
aacaaagttgtcgattcctggtcaaaatgtaacgataaagtcaccgacgcaatgatgaat
acgatttcggcgccgcgcttggatgatgacggatctgaaagcgagccgaacagcgtttat
atgatggcccattcgggcgcgcgtggatcggttacccagatgaagcaactgggcggtatg
cgtggtctgatggccaagccgaacggcgatattattgaaacgccgatcatttcaaacttt
aaagaaggtttgacggtgcttgaatatttcaactctacccacggtgcgcgtaagggcttg
tcggatacagcgttgaaaacagcgaactctggatatctaacccggcgtttggttgatgtt
gcacaagattgcattgtgcgcatgaatgattgtggtaccgaacaatccatcacggccgaa
acggccgtcaatgatggggaagttgtctcatcgttggccgagcgcgtgttgggccgggtt
gctgctgaggatattttacgccccggaacggaagacatgttggtcgccaaaggcgagctg
atcgatgagattatggccgataagatcgatgaggcgggtctgcaaacggcgcgcatccgc
tctcctttgacctgcgaagctgaagagggcgtttgtgcattgtgctacggacgagatctt
gcgcgcggtactatcgtgaataccggcgaagcggtgggcatcatcgcggcgcaatcaatc
ggtgaacctggtacgcagctgacaatgcggacattccacattggcggcgttgcgcaaggg
ggccagcaatccttcttggaagccagccaaagtggtgtgattgagtttgagaacccacaa
acgttgaaaaacgcgcagggtgacatgttggtgatggggcgcaatatgaagctgcgcatc
ctagatgaaaatggggatgaattggccagccataaattgggctatggcacgaagttattc
gtggccgaaggggccaaggttgaacgcggcgataaattatttgagtgggatccctatact
ttgccgatcatcgccgaaaaagccggtgtcgccaaacatgtggacctggccaatggcgtt
gccgtgcgtgaagaaaccgatgatgcaaccgggatgacgcagaaaatcgttattgactgg
cgcgccgccgcaaagggcagcgaattgaagcctgaaattatccttgctggtgaagatggt
gagcctgtgcgcaatgaggcgggcaatccaattacctatccaatgtcggttgatgcaatc
ttgtcggtcgaagatggtcaagaggtgaaagcgggggatgtggtcgcccgtattccgcgt
gaaggggcgaaaacaaaagacattacaggtggtttgccgagggttgctgaattgtttgag
gcacgccgtccaaaagatcacgcgattatcgcggaagtcgatggatatgtgcgctttggg
cgcgattataaaaacaagcgacggatcagcattgagccggccgatgaatcgctggagctg
gtggaatatatggttcccaaaggaaagcatattccggttgccgagggtgattttgtgcaa
aagggcgattacatcatggatggcaacccagccccacatgatattctggccattatgggc
attgaagcgctggcaaattacatgatcgatgaggtgcaggatgtgtatcgtttgcaaggt
gttaaaatcaacgacaagcatatcgaagtgatcgtacgccagatgctgcagaaatgggaa
atcgccgaaagcggtgacaccactttgctgaaaggcgaacatgtcgataaggcggagttt
gacgcagcaaatgaaaaagccctgtcaaaaggcggacgtccggcgcagggtgaacctatt
ttgctaggcatcacaaaagcatccttgcaaacgcgctcgtttatctctgccgcctcattc
caggaaaccacacgggttctgaccgaggcatcggtgcaaggcaagcgggataaattggtt
ggtctgaaagaaaacgtgatcgttgggcggcttattccagcgggcacagggggcgcgacg
caacaagttcgccgtatcgccacagagcgtgacaatgtggtgcttgaagcgcgccgcgag
gaagctcaggctgcggccgccttagccgcacccagcgaagatgatgtgtttaaagaggct
acggcaagcgaaagctaa
DBGET
integrated database retrieval system
