Thalassovivens spotae: UM181_02070
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Entry
UM181_02070 CDS
T11788
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tspo Thalassovivens spotae
Pathway
tspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UM181_02070 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tspo03021
]
UM181_02070 (rpoB)
03400 DNA repair and recombination proteins [BR:
tspo03400
]
UM181_02070 (rpoB)
Enzymes [BR:
tspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UM181_02070 (rpoB)
Transcription machinery [BR:
tspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UM181_02070 (rpoB)
DNA repair and recombination proteins [BR:
tspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UM181_02070 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
WQC63421
LinkDB
All DBs
Position
complement(402387..406523)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSYLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGEAEIPTDGEGIKGVFQSV
FPIKDFNETSVLEFVGYDLEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGLDQEGIMSAYYDTVNFHVVK
GKGWKTKFFPERVRGTRPIYDLIDAATGEVIAEAGKKVTPRAVKKLIDEGKVTELLVPFD
QIIGKFVSQDLINEETGAIYVEAGDELTAEYDKEGEMIGGSLKDLVDAGFADIPVLDIDN
VNVGPYMRNTMMQDKNLSRDTALMDIYRVMRPGEPPTVDAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDAEDTQRTLRKEDIVSCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHATHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRIVKDATVTDEVHYLSATEEMRHTVAQANAKLDVNGRFVNDLVSTRQSG
DYTLAPVENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEIVARDSGAAIMAKRAGVVDQVDAQRIVIRATEDLDLGDAGVDIYRMRKFQRSNQ
NTCINQRPLIKVGQAVSKGEVIADGPSTDLGELALGKNVVVAFMPWNGYNYEDSILISER
VARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELAILDRNIYARLRSMIIGKTVLKGPKGVKANAVIDEDL
LESLSRGQWWQLALSEEGDAKIVEALHEQYEVQKRILDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGVNIDESLNDYRRSGDLTPVREAMRLAYGDDVYEEGIAGMDEDS
LVEAAGNVCNGVPIATPVFDGAKEGDVNDALVRAGFDQSGQSILFDGRTGEQFTRPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDTEDDA
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcatatctcggccagaagcgtttgcgtaaatattacggaaaaattcgcgaa
gttcttgacatgccaaacctgattgaagtgcaaaaatcatcttatgatttgtttttgcgc
tcgggcgaggcggaaattcccactgatggcgaaggcatcaaaggcgttttccaatcggtg
tttccgatcaaagatttcaacgaaacctctgtgctggaatttgttggctatgatttagaa
aagcccaaatatgacgtcgaggaatgccagcagcgtgatatgacctatagtgctccgctc
aaggtcacgctgcggctgatcgtgtttgatgttgatgaagatacgggcgccaaatcggta
aaagacattaaagagcaagacgtgtttatgggcgatatgcctttgatgacaccgaatggc
acctttgttgtcaacgggaccgaacgggtgatcgtttcacagatgcatcgctctcctggg
gtgtttttcgatcatgataaaggtaaaacgcacagctcgggtaagctgttattcgcctgc
cggatcattccgtatcgcgggtcttggcttgattttgaatttgatgccaaagacttggtg
tttgcgcggatcgatcgccgccgtaaattgccggtaaccacgctgctttacgcgcttggc
ctggatcaagaaggcatcatgagcgcctattatgatacggtgaatttccacgttgtgaaa
ggcaaagggtggaaaacgaaattcttcccagagcgcgtgcgcggcacccgtccaatttat
gatctaatcgatgcagcgacgggtgaagtgattgctgaagccggcaaaaaagtaacgccc
cgcgcggtgaaaaaattgatcgatgagggcaaagtaaccgagcttttggtgccgtttgac
caaattattggtaaatttgtgtctcaagatttaatcaatgaggaaaccggcgcgatttac
gtagaagcgggtgatgaactaaccgcggaatatgataaagaaggcgaaatgatcggtgga
tcgttgaaagatcttgtggatgccggctttgccgatattcccgtacttgatatcgataac
gtcaatgttggcccctatatgcgcaacaccatgatgcaggataaaaacctcagccgtgat
accgcgctgatggatatttaccgcgtcatgcgcccgggcgaaccgcccaccgtagatgct
gcttccgcgctgtttgacacgctgtttttcgacagcgagcgctatgatttatccgcggtt
ggccgcgtgaaaatgaatatgcgtttggcgcttgatgcagaagatacgcagcgcacattg
cgcaaagaagatattgtgtcttgcatcaaggcgttggttgagctgcgcgatggcaagggt
gatatcgacgatattgatcacttgggcaaccggcgcgtgcgttcggttggcgaattgatg
gaaaaccaatatcgggtcggattgctgcggatggagcgggcaattaaagaacggatgtca
tcggtcgaaatcgatactgtgatgccacaggatttgatcaacgcgaaaccggctgctgcc
gcggtgcgtgaattctttgggtccagccaattatcgcaatttatggaccaaaccaaccct
ctttcagaagtcacccacaaacgccgcctgtcggcgcttgggccaggcgggttaacgcgt
gagcgggccggttttgaggtgcgcgacgtgcacgcaacccattatgggcgcatgtgtccg
attgaaacgccggaggggccaaatattggcctaatcaactcattggcaacctttgcacgc
gtgaacaaatatggttttatcgaaacgccctatcggatcgtgaaggatgcgacggtgacg
gatgaggtacattacctctctgccacagaagaaatgcgccatacggtggcacaagccaat
gcgaaattggacgtgaacggacggtttgtgaatgatctggtgagcacgcggcaatctggc
gattacacgcttgcgcccgtcgagaatgttgacctgatcgatgtgagcccaaagcagttg
gtatcggttgcggcctcgctaattccgtttttggaaaatgacgatgcgaaccgcgctttg
atgggctcgaacatgcaacgtcaggcggtgcctttgctacgggccgaggcgcctttggtt
ggcacgggcatcgaagaaatcgtagcgcgggattccggtgcggcgattatggcgaaacgc
gcgggtgtagtggatcaggttgacgcgcagcggatcgttatccgggcgaccgaagacctg
gatcttggcgatgcgggtgttgatatttaccggatgcgtaaattccagcgcagcaaccaa
aatacttgcatcaaccagcgcccactcattaaagtggggcaagcggtgtctaaaggcgaa
gtgatcgctgatgggccctcaactgatttgggtgaattggctttaggtaaaaacgtggtg
gtcgcgtttatgccttggaacggctataattacgaagattcaattctgatttcagagcgc
gtggcgcgcgatgatgtgtttacgtcggttcatattgaagaatttgaagtggcagcgcgc
gacaccaagcttggccctgaagaaatcacacgtgatattccaaatgttggcgaagaagcg
ctgcgcaatttggatgaggcggggatcgtttatattggtgctgatgtagagccaggtgat
attctggttggaaaaatcacgccgaaaggcgaaagcccaatgacgcctgaagaaaagctt
ctcagagcgatctttggtgagaaagcgtcggatgtgcgcgatacatctttgcgcgttaag
ccaggcgattttggtacggttgttgaagtgcgcgtgttcaaccgccatggcgttgaaaaa
gatgagcgcgctttgcaaattgagcgcgaagaggttgagcgtttggcgcgagaccgcgat
gacgagctggcgattttggatcgcaacatctatgcccgtctgcgcagtatgatcattggc
aagacggttctaaaaggcccgaaaggcgtgaaagccaacgccgtgatcgacgaagatttg
cttgagagtttaagccgtggccagtggtggcaattggcgttgagcgaagagggcgatgcg
aagatcgttgaggccttgcacgagcaatatgaagtacaaaagcggattctagacgcccgc
tttgaagataaagttgaaaaagtgcgccgcggtgatgatctgccccctggcgttatgaaa
atggtaaaagtctttatcgcggtgaagcgtaagctgcagccaggcgataaaatggcgggc
cgtcacggcaataaaggggtgatctcaaaggttgtgccaatggaagatatgcctttcttg
gcagatggaacgcctgttgatttctgtttgaaccctctgggcgtgccttcgcgtatgaat
gtgggccaaatcttagaaacccatatggggtgggcggcgcgcggtctgggcgtgaatatc
gatgaatccttgaatgattatcgtcgttcgggtgatttgacaccggtgcgtgaggcaatg
cgtctggcatatggtgatgatgtctacgaagaaggcattgccggcatggatgaagacagt
ttggttgaagcggcgggcaatgtctgcaatggcgtgccgatcgcgacaccggtctttgat
ggcgccaaagaaggcgatgtgaatgacgcgctggtgcgggctggttttgatcaatcgggc
caatccatcctgtttgatggccgcacaggtgagcaattcacccgtccggtcacggttggg
ataaaatacctgctgaagttacatcacttggtggatgataaaatccacgcacgctcaact
gggccctacagcttggtcacgcagcagccattgggtggtaaagcccaatttggcggccag
cgctttggtgaaatggaggtttgggctttggaagcttacggcgcggcttacacattgcaa
gaaatgttgacggtcaaatctgatgacgttgcagggcggacgaaagtctatgaaagcatc
gttaaaggtgaagataacttcgaagcgggcattccggaatccttcaatgttttggtgaag
gaagtccgtggtctcggcctgaatatggaactcttggacacggaggatgatgcgtag
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