Thalassovivens spotae: UM181_05685
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Entry
UM181_05685 CDS
T11788
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tspo Thalassovivens spotae
Pathway
tspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UM181_05685 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tspo03021
]
UM181_05685 (rho)
03019 Messenger RNA biogenesis [BR:
tspo03019
]
UM181_05685 (rho)
Transcription machinery [BR:
tspo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UM181_05685 (rho)
Messenger RNA biogenesis [BR:
tspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UM181_05685 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
NACHT
OB_RNB
AAA_25
ATPase_2
AAA
Motif
Other DBs
NCBI-ProteinID:
WQC64090
LinkDB
All DBs
Position
complement(1168422..1169693)
Genome browser
AA seq
423 aa
AA seq
DB search
MAVERLNLSDLKRKSPKDLVALAEELEIENASTMRKGEMMFQILSVRADEGWEVAGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRKFALRTGDTIEGVIKAPEENERYFALVN
AFKINFEEPEKARHKIAFDNLTPLYPDERLTMELADPTAKDKSARIIDLVAPIGKGQRSL
IVAPPRTGKTVLLQNIATSIEQNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEP
ATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVIPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PALDILKSGTRKEELLVDKIDLQKTFVLRRILNPMGTTDAVEFLISKLKQTKSNSDFFDS
MNS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgaacggctgaacctttccgatttgaaacgtaaaagtccaaaagatttagtg
gctttggccgaagagctggaaattgaaaacgcatcaacgatgcgtaaaggcgaaatgatg
ttccaaattctgagcgtgcgcgcggatgagggatgggaagttgcgggcgacggcgtgttg
gaagttttgcaggatggttttgggtttttgcggtcacctgaagcgaattatttgcctggt
ccagacgatatttatgtatcgccagacatgatccgaaaatttgcattgcgcacgggtgac
acgatcgaaggggtgattaaagcacccgaagaaaatgaacgttattttgcattggttaat
gcgttcaaaattaattttgaagagcctgaaaaagcccgtcataaaattgcttttgacaat
cttacaccgctgtatccggatgaacgtttgacgatggagttggcagatccaacagcgaag
gataaatctgcgcgcattatcgatttagttgcgccgattggcaaaggtcaacggtctttg
atcgtagcaccgccgcgcacgggtaaaacggtattgttgcaaaatatagcgaccagtatc
gaacaaaatcaccctgaatgttacttgatcgttttgttgattgatgaacgtccggaagaa
gttacggatatgcaacggtctgtgaagggtgaggttgtatcatccacctttgatgaacca
gcaacgcggcatgttgcagtgtcggaaatggttatcgaaaaagccaagcgccttgtggaa
cacaaacgtgacgtggtgatcctgctggattcgattacccgtttagggcgggctttcaac
acggtcattccatcttcgggcaaggtattgaccggcggtgtcgatgcgaacgcgttgcaa
cgcccaaagcggttctttggggctgcgcgtaacatcgaagaggggggttcattaacgatt
atctcaaccgctttgattgatacgggaagccggatggacgaagtgattttcgaagaattt
aaaggaacgggtaattctgaaattgttttggatcggaaagttgcggataagcgcgttttc
cctgcgttggatattttgaaatctggtacgcgaaaagaagagctgctggttgataagata
gatcttcagaaaacttttgtgttgcggcgtattctgaaccccatgggaacaacggatgct
gttgagtttttaatctcgaaactcaagcaaacaaaatctaattctgatttcttcgattca
atgaattcttaa
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