Thamnophis sirtalis (common garter snake): 106537550
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Entry
106537550 CDS
T06107
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106537550 (COL25A1)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106537550 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106537550
NCBI-ProteinID:
XP_013907194
UniProt:
A0A6I9WWA6
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MGAKREQGLWHGGGGGRGGFPCCLFQPSMMGQRNPDAKGEAGCFAGQGFCSLRSAPPFKS
LLAAFLLSVGSLASCVYLGMKTNDLQARVFAIEAAQGDMGAAAAVAGSYRSLPSYSLDQL
NSLMQEKVEQLLAQKTYEHMAKIRTIREASSECNCPPGPPGKRGKRGRRGETGPPGQPGP
QGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
RGPPGDTGKDGPRGVPGVPGEPGKPGEEGLVGPQGPPGQKGSFGAPGIPGTDGQQGEPGV
MGERGFSGLKGDPGHRGEKGDAGESGPKGYPGEKGDPGSSAAGIKGEPGQSGRPGQKGEP
GLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGEIGPPGKGERGEPGVPGPKGRSG
ESGTRGPKGSKGDPGNNGDLGVMGPRGPPGEKGDQGATEIIDFNGNIHEALQRITTLTVT
GPPGPPGPQGLQGSKGEPGSPGLPGADGEQGFKGSKGDLGDPGISGEKGGIGLPGLPGSN
GMKGEKGDIGLPGPQGPSIVGPPGSPGPHGPPGPMGPHGLPGPKGASGLDGKPGARGMDG
PVGPHGPAGPKGDRGEKGIAGDPGPRGPYGLPGKDGEPGLDGFRGIKGEKGEPGQPGLDG
LDAPCQLGPDGLPMPGCWQK
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgggtgctaaaagggagcagggtttgtggcatggaggaggaggaggaagagggggattt
ccgtgctgcctcttccagccaagcatgatggggcaaagaaaccccgatgccaagggggaa
gccggctgctttgccggtcagggcttctgctccctcaggtctgctccgcccttcaagtcg
ctgctggctgccttccttctctcggtgggatccctagcttcctgtgtctatctggggatg
aagaccaacgaccttcaggccagggtttttgccattgaggcagcgcaaggggacatgggc
gctgctgctgcagttgccgggtcctaccggtcgctgcccagctattctttggatcagctg
aattccctgatgcaggagaaagtggagcaacttctggctcagaagacctatgaacatatg
gcaaaaatcagaaccataagagaagcttcttcagaatgcaactgcccaccaggtcctcct
ggtaaacgaggtaagcgaggaagaagaggagagaccggacctcctggtcaacctggtcct
caaggtccacctggtccaaaaggtgagaagggagatcaaggtgatcagggccctcggatg
gtgtttcctaaaatcaatcatgggtttctttctgctgatcagcagctcattaaacgccgc
ctcattaagggtgatcaagggcaggctggaccccctggaccccctgggcccccaggacca
agaggccctcctggagatactggcaaagatggcccacgtggagtgcccggggtaccggga
gaacctggaaaaccaggtgaagaaggtttggtgggacctcaggggcctccaggacaaaag
ggctcatttggtgcacctggtatcccaggaacagatggacaacagggagaacctggtgta
atgggagaaagaggcttctctgggcttaagggtgatcctggacatcggggagaaaagggt
gatgctggagaaagtggccccaaaggttatcctggagaaaagggtgatcctggatcttct
gctgctggaattaagggtgaacccggacaatcgggtagaccaggacaaaagggtgagcct
ggacttcctggacttcctgggttacctggaattaagggtgaacccggtttcctaggtcca
cagggagaacctggattgccaggattgccagggacaaagggtgaaagaggagaaattgga
cctcctgggaaaggtgaacgaggtgagcctggagttccagggccaaaggggaggtcaggt
gaatctggaactagaggccctaaagggtcaaagggtgatccaggaaataatggtgatttg
ggagtaatgggaccaaggggtccacctggagaaaaaggtgaccaaggtgctacagaaatc
attgacttcaatggaaatatccatgaagcattacagaggattaccaccttaactgtcacg
ggtcctccaggcccacctggaccccaaggattgcaaggatcaaagggtgaacctggatca
ccaggattacctggcgctgatggggagcaggggttcaaaggttcaaaaggtgatctgggt
gaccctggaatatcaggagaaaaaggaggtattggacttcctggtttgccaggatccaat
ggaatgaaaggagaaaaaggagatattggattaccaggtccccaaggtccctctattgta
ggacctccaggttctcctggtccacatggtccaccaggacctatgggacctcatggactc
ccagggccaaagggagcatctggcttagatggaaagccaggagcccggggtatggatggt
cccgttggtccacatggccctgcaggtccaaagggagacagaggtgaaaaaggaattgca
ggagatcctgggcccagaggaccatatggtttgcctggcaaagatggtgaacctggcctt
gatggattccgtggaattaagggggaaaaaggggagccaggccagcctggtctggatggg
ctggatgccccttgccaattgggaccagatgggttaccaatgcctggttgctggcaaaag
tga
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