Thamnophis sirtalis (common garter snake): 106537708
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Entry
106537708 CDS
T06107
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04142
Lysosome
tsr04144
Endocytosis
tsr05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106537708
04142 Lysosome
106537708
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
106537708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106537708
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106537708
Membrane trafficking [BR:
tsr04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
106537708
Exosome [BR:
tsr04147
]
Exosomal proteins
Proteins found in most exosomes
106537708
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
TPR_1
Motif
Other DBs
NCBI-GeneID:
106537708
NCBI-ProteinID:
XP_013907378
UniProt:
A0A6I9X7M3
LinkDB
All DBs
Position
Unknown
AA seq
1154 aa
AA seq
DB search
MRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQ
TRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVV
HTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIEL
FESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKN
FLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLD
VDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAK
IYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFK
SLSRYLVRRKDPELWASVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLP
NELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS
NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMV
KEAIDSYIKADDPSSYMEVVQAANASGNWEELVKYLQMARRKARESYVETELIFALAKTN
RLAELEEFINGPNNAHIQQVGDRCYEEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV
DGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT
MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWGEL
VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLND
LLMVLSPRLDHTRAVNFFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR
TSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDRLYKDAMQYA
SESKDTELAEELLQWFLQEGKQECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQ
VMKEYLSKVDKLDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTA
PPYGQPQPGFGYSM
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcagcccggaccaaggacagcagtttgcccagatgttggtgcaggacgaagaa
cctctggcagatattacccaaatagtagatgtgtttatggaatacaacctgatccagcag
tgtacagcttttctcttggatgccctgaaaaacaaccgtccatccgaagggcctttgcaa
actcgtttgcttgaaatgaatctaatgcatgcacctcaggtcgccgatgccatcttgggg
aatcagatgtttacccactacgaccgagcccacatcgctcaactgtgcgagaaagccggt
ctcctccaaagggcgctggaacatttcactgacttgtacgacatcaagcgagccgtggtt
cacactcaccttctcaaccccgagtggctggtgaactactttggctccctttccgtggaa
gattccttggaatgcttgcgggcaatgctgtcagcaaacatccgccagaacttgcagatc
tgcgtccaggtggcttccaagtaccacgagcagctttcaactcagtcgctcatcgagctc
tttgaatcattcaagagttttgaaggtctcttctacttcctgggctctattgttaacttc
agccaagacccggacgtgcatttcaaatacatccaagctgcttgtaagaccggccaaatt
aaagaggtggaaagaatttgcagggagagcaactgctacgatccagaacgcgtgaagaac
ttccttaaggaagccaagttgacagaccagctcccgctgatcattgtttgcgaccgcttt
gactttgtccacgacctggtcctgtacctgtataggaacaatcttcagaaatatattgag
atctacgtgcaaaaggtgaaccccagccgtctgccggtggtcattggtggcttgttggat
gtggactgctctgaagacgtcatcaagaatttgatcctggtggtgcgaggccagttctcc
accgatgaacttgtcgccgaagtggaaaaaaggaacaggttgaaactcctcctgccgtgg
ctagaggccagaatccacgagggttgtgaagaaccagctacacacaacgccctggctaaa
atttacatcgatagtaacaacaacccggaaaggtttttacgagagaacccttattacgac
agccgtgtggtggggaagtactgtgagaagagagatcctcatctagcttgcgtggcttac
gagcgaggacagtgtgaccaggagctgatcaacgtatgcaacgagaactcgctcttcaag
agcctgtcccgttacctggtgcgccgtaaggatccagaactgtgggccagcgtgctgtta
gaaagcaacccttaccggcggcctctcattgaccaggttgtgcaaacagctctgtccgag
actcaggatcccgaagaggtctctgttaccgtcaaagcgttcatgaccgctgacctcccg
aatgaacttattgaactgctggagaaaattgtcctggataattccgtgttcagcgaacac
aggaatctccagaatctgctcattctgacagccatcaaggccgatcgcacccgggtcatg
gaatacatcaatcgcctggataactatgatgcccctgacatcgccaacatcgccatcagc
aacgagctctttgaagaagcctttgccatctttcggaaatttgacgttaacacttctgcc
gtccaggttttgatcgagcacattgggaacctggaccgggcctatgagtttgccgagcgt
tgcaatgagccggcggtgtggagccagcttgccaaagcccaactccagaaagggatggtg
aaggaagccatcgactcctacatcaaagccgacgacccgtcgtcctacatggaagttgtc
caggctgccaacgcaagtggcaactgggaagagctggtgaagtacttgcagatggcccgt
agaaaggcccgagaatcctacgtggagacggagctcatctttgcactggctaaaacaaac
cgcctggccgaactggaagaattcatcaacgggcccaacaacgcccacattcagcaagtt
ggggaccgttgctatgaagagaagatgtacgatgcagccaaacttctatacaacaacgtc
tccaattttggccgcttggcctccacgttggttcatttgggtgaataccaggcagcggtg
gatggggcccggaaggcaaacagcacaagaacttggaaggaggtttgctttgcctgcgtt
gatgggaaggaattccgcttggcccagatgtgcggtttgcatatcgtcgtgcacgccgat
gaactggaagaactcattaattactaccaggaccgcggctactttgaggagttgataacc
atgttggaagctgctttggggctggaacgggctcatatggggatgttcaccgaactggcc
atcctctactccaaattcaagccacagaagatgagggagcacttggagctgttttggtca
cgggtcaacattccaaaggtgttgagggctgctgagcaagcccacctctggggagagttg
gttttcctgtacgataaatatgaagaatacgataatgctattattacaatgatgaaccat
cccacagatgcctggaaggaagggcaattcaaggacatcatcactaaggtggcgaatgtg
gagctttactacaaagcaattcagttttacctagaatttaaacctctgctgctcaacgac
ttactgatggtgctttcgccgcggctggatcatacccgtgcggtcaatttctttagtaag
gtgaagcaacttccgctggtgaagccctacctgcgctcggtgcagaaccacaacaacaaa
tccgtgaacgagtccctcaacaacctcttcattacagaagaagattaccaggctcttcgg
acatcgatagacgcctacgacaacttcgacaacatctccctcgcccaacgcctggagaaa
cacgagttgattgagttccggagaatcgccgcctatctcttcaaagggaacaaccgctgg
aagcaaagcgtggaactctgcaaaaaagaccgactctacaaggacgccatgcaatacgcc
tcagagtccaaagacacggagctggcggaggagctgctgcagtggttcctccaggaaggc
aagcaggaatgttttggcgcctgcctcttcacttgctacgaccttctccggccagacgtg
gtcttggaaaccgcctggagacacaacatcatggactttgccatgccctacttcatccag
gtcatgaaggaatacttgagcaaggtggacaagctggacgcctcagaatcgctgaggaaa
gaggaagagcaggcgacggagacccagcccattgtttacggtcagccccagctcatgttg
acggccggccccagcgtggcagtccctcctcaagcaccttttggttacggctacaccgca
cctccctatgggcaaccccaacccgggtttggatacagcatgtaa
DBGET
integrated database retrieval system
