Thamnophis sirtalis (common garter snake): 106537782
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Entry
106537782 CDS
T06107
Symbol
CDH20
Name
(RefSeq) cadherin-20
KO
K06807
cadherin 20, type 2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106537782 (CDH20)
Cell adhesion molecules [BR:
tsr04515
]
Cadherins
Major cadherins
106537782 (CDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
106537782
NCBI-ProteinID:
XP_013907499
UniProt:
A0A6I9WX41
LinkDB
All DBs
Position
Unknown
AA seq
798 aa
AA seq
DB search
MKMRTSSRMDNAKKWLGLSFCFMMNLITTVLSGTSRPPSKGQGQNLSDNLLLHQRMKRSW
VWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQR
LDREERSQYTLRAQALDRRSGRPMEPESEFIIKIQDINDNEPKFLDGPYVASVPEMSPVG
TSVIQVTATDADDPTYGNSARVVYSVLQGQPYFSVDSRTGLIRTALMNMDREAKEYYEVI
IQAKDMGGQLGGLAGTTTVNISLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVLAKDL
DEGINAEMKYSFVDGDGLDVFDITTDLNYQAGIITVRKPLSFETKKTYTLKVEGANPHLE
MRFLNLGPFRDTTTVHISVEDVDEPPVFEPSFYFVEVPEDVDIGTTIQMINAKDPDVINN
SIRFSIDRSSDPGRFFYVDIITGALMTARPLDREDISWHNISVLGVEMNNPSQVGSVSVT
IRVLDINDNMPEFPRFYEAFVCENAKVGQLIQTVSAVDQDDPQDGQHFYYSLAPETANNP
NFTLRDNQDNTAWILTKRSGFRQQEQNTFYLPILIADNGRPVLSSTGTVTIHVCSCDEKG
LVMSCNAEAYVLPVSLSRGALIAILACIFVLLVLVLLILSMKRHRKQPYMLDEDENIHEN
IVRYDDEGGGEEDTEAFDISALWNPREAQAFMKNRQDMMPEIESLSRYVPQACTMDSSVH
SYVLAKLYEADMDLWAPPFDSLQTYMFEGNGSAAESLSSLQSVTTDSEQSYDYLTDWGPR
FRKLAEMYGATEGSGTLW
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcggacatcaagcagaatggacaatgcaaagaagtggctcggactcagtttt
tgctttatgatgaacctcattacaactgtattatctggaactagcagacctccaagcaaa
ggccaaggacaaaatctctcggacaacttgcttcttcatcaacggatgaagaggagttgg
gtgtggaaccagttcttcgttctggaagaatacacgggaacagatcctctgtacgttggg
aagctccattctgatatggacagaggagatggatccatcaaatatatcctttcgggagaa
ggagcaggaattgtttttactattgatgacaccactggagacatccatgccattcagaga
ctagatcgagaagaaagatctcaatatactttacgggcccaagccttggatagacgaagt
ggcagaccaatggaaccagaatctgaatttatcatcaaaatccaagatatcaacgataat
gaacccaaattcctagatgggccatatgttgcttcagttcctgaaatgtcaccagtgggc
acctctgttatccaagtgacagcaacagatgctgatgatcctacttatgggaacagtgcc
agggtagtctacagtgttctccaaggacagccatatttctctgtggactccagaacagga
ttaattaggacggcactaatgaatatggacagagaagcaaaagaatattatgaagttatt
atccaagccaaagacatgggaggacagctgggaggattagccgggacaactacggtcaat
atttctctctctgatgttaatgataatccacccagatttccacagaaacattatcagatg
agcgtactggaatctgctccagtcagttccaccgtgggtcgtgttcttgctaaagacttg
gacgaaggtattaatgcagagatgaaatacagttttgtggacggggatggactggatgtc
tttgatattaccaccgatcttaattaccaagctggcatcatcactgtgagaaagccactg
agctttgagaccaagaaaacttacactttaaaagtagaaggtgccaatccacaccttgaa
atgcgtttcttgaatctaggtccattccgggacacgacaactgtgcatatcagtgtggaa
gatgttgatgaacccccagtttttgagcctagtttttattttgtggaagtgcctgaagat
gtggacattgggaccaccatacaaatgataaacgccaaggaccctgatgtgatcaacaat
tcaatcagattctccatcgatcgaagcagtgatcctggacgcttcttctatgtggacatt
ataacaggtgctctgatgactgcaagacctctggatcgggaagacatttcatggcacaat
atcagtgtgctaggtgtggaaatgaacaatccttcgcaggttggaagtgtttcagtaaca
ataagagtcctggatataaatgacaacatgcccgaatttcccaggttctatgaggcattt
gtctgtgaaaatgcaaaagttggacagctgatccagacagtaagcgcggtggatcaagat
gacccacaagacggacagcacttctactacagcctggctcctgagacagcaaataacccg
aattttactcttagggacaatcaagacaacacagcttggattttaaccaagaggtcggga
tttcggcaacaggagcagaataccttttatcttcccatcttaatagcggacaatgggcgt
cctgtgctaagcagtactgggacagtcaccattcatgtttgcagttgtgatgagaagggc
cttgtgatgtcctgtaacgcagaggcctacgtgctccctgtcagcctgagcagaggagcc
ctgattgccattctagcttgcattttcgttttgcttgttctggtgctactgatcttatcc
atgaagagacaccggaagcagccttacatgcttgatgaggacgagaatatccatgagaac
attgtccgatatgacgacgaaggcggcggggaagaagatacggaagctttcgacatctct
gccctgtggaatcccagggaggcccaagcgttcatgaagaaccgacaagacatgatgcca
gagatcgaaagcctctcaagatacgtccctcaggcctgcacaatggacagcagtgttcac
agctatgtattggccaaactctatgaagcggacatggacctctgggctcctcccttcgac
tccctccagacctatatgtttgagggcaacggctcagcggccgaatcgctcagttcctta
cagtctgtaactacggactcagaacagagctatgactatctgacagactggggaccacgc
tttaggaagctggcggaaatgtatggcgccacagaggggagtgggactctttggtaa
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