KEGG   Thamnophis sirtalis (common garter snake): 106538125
Entry
106538125         CDS       T06107                                 
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr03040  Spliceosome
tsr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106538125 (PRPF19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106538125 (PRPF19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsr03041]
    106538125 (PRPF19)
   04121 Ubiquitin system [BR:tsr04121]
    106538125 (PRPF19)
   03400 DNA repair and recombination proteins [BR:tsr03400]
    106538125 (PRPF19)
Enzymes [BR:tsr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106538125 (PRPF19)
Spliceosome [BR:tsr03041]
 Complex B
  Other components
   Prp19 complex
    106538125 (PRPF19)
 Complex C
   Prp19-CDC5 complex
    106538125 (PRPF19)
Ubiquitin system [BR:tsr04121]
 Ubiquitin ligases (E3)
  U-box type E3
   106538125 (PRPF19)
DNA repair and recombination proteins [BR:tsr03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    106538125 (PRPF19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR75_1st Beta-prop_EML DSE1_N ANAPC4_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_SCAP Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_EIPR1 CFAP251_N Beta-prop_RIG_2nd ASA1 Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_Vps41 NBCH_WD40 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_DCAF4 eIF2A PAC11 DNAI3_WD Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_Nup120_160 PROPPIN Beta-prop_DCAF12 TRM82_WD Beta-prop_WDR35_TULP_N DUF1830 Nucleoporin_N Cytochrom_D1 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 106538125
NCBI-ProteinID: XP_013908013
UniProt: A0A6I9X9T9
LinkDB
Position
Unknown
AA seq 241 aa
LQDKATVLTTERKKRGKTVPEELVKPEELNRYRQVASHVGLHSASIPGILALDLCPSDTN
KILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVSG
ASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCALTC
AQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSS
V
NT seq 723 nt   +upstreamnt  +downstreamnt
cttcaagacaaagccacagtgctgaccacagagcgcaaaaagagagggaagactgtgcca
gaggaactggtgaaaccagaagaacttaatagataccggcaggtggcttcacatgtggga
ttgcacagtgccagcatccctggcatccttgctcttgacctgtgtccttctgataccaac
aagatcctcacaggtggggctgataaaaatgttgttgtctttgacaagagctcagaacag
atcctggccaccctgaaaggtcacacaaagaaggtcaccagcgtagtcttccatccatcc
caggaactggtgttttcagcatctccagatgctactatccggatttggtctgtctctggc
gcttcctgtgtgcaagttgtaagagcccatgaaagtgctgtcacagggctgagtcttcat
gcaactggggattatcttctgagctcttctgatgatcagtattgggctttctctgacatc
cagactggccgtgttctcaccaaggtcacagatgaaacttctggctgtgctctcacctgt
gctcagttccatcctgatgggcttatttttgggacaggaacaatggactcccagattaaa
atctgggacttaaaggaacggactaacgtcgcaaacttccctggacactctggtcccatt
actagcattgccttctctgagaatggctactacttggccactgctgctgatgactcctca
gtc

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