Thamnophis sirtalis (common garter snake): 106538306
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Entry
106538306 CDS
T06107
Symbol
HSPD1
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106538306 (HSPD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106538306 (HSPD1)
03110 Chaperones and folding catalysts [BR:
tsr03110
]
106538306 (HSPD1)
03029 Mitochondrial biogenesis [BR:
tsr03029
]
106538306 (HSPD1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106538306 (HSPD1)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
106538306 (HSPD1)
Messenger RNA biogenesis [BR:
tsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
106538306 (HSPD1)
Chaperones and folding catalysts [BR:
tsr03110
]
Heat shock proteins
HSP60 / Chaperonin
106538306 (HSPD1)
Mitochondrial biogenesis [BR:
tsr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
106538306 (HSPD1)
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
106538306 (HSPD1)
Exosomal proteins of other body fluids (saliva and urine)
106538306 (HSPD1)
Exosomal proteins of breast cancer cells
106538306 (HSPD1)
Exosomal proteins of colorectal cancer cells
106538306 (HSPD1)
Exosomal proteins of bladder cancer cells
106538306 (HSPD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
106538306
NCBI-ProteinID:
XP_013908228
UniProt:
A0A6I9XAF7
LinkDB
All DBs
Position
Unknown
AA seq
572 aa
AA seq
DB search
MLRLPSVLRQLRPVSRALAPHLTRAYAKDVKFGAEARALMLQGVDLLADAVAVTMGPKGR
TVIIEQSWGSPKVTKDGVTVAKAIDLKDKYKNIGARLVQDVANNTNEEAGDGTTTATVLA
RSIAKEGFEKISKGANPVEIRRGVMLAVEAVINELKKLSKPVTTPEEIAQVATISANGDK
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTAKGQKCEFQ
DAYLLISEKKISTVQSIVPALEIANNHRKPLVIIAEDLDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLKDMAIATGGAVFGEEGLSINLEDVQPHDFGKVGEVIVTKDDCLLLKG
KGDKTQIEKRIQEIIEQLETTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDIEVNEKKDR
VTDALNATRAAVEEGIVLGGGCALLRCIPALDALTPVNEDQKTGIEIIRRTLKIPAMTIA
KNAGVEGSLIVEKIMQSSPEIGYDAMLGDFVNMVEKGIIDPTKVVRTALMDAAGVASLLS
TAEAVVTEIPKEEKDAAAAMGGMGGGMGGGMF
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtttaccatcagtgctacgtcaactaaggccggtatccagagctctggcccca
caccttacaagagcctatgcaaaagatgtgaaatttggagcagaagccagagctcttatg
ctgcagggagtagatcttctagctgatgctgtagctgtcactatgggaccaaagggaaga
acagtaattatcgaacagagttggggaagcccaaaggtgacaaaagatggtgtgacggta
gccaaggccattgatttgaaggacaagtacaaaaacattggagcaagactagttcaagat
gttgccaacaacaccaatgaagaggcaggagatggtacaactactgcgaccgtattggca
cgttcaattgccaaggaaggatttgaaaagatcagtaaaggagcaaatccagtggaaatt
agaagaggtgtgatgcttgctgtggaggctgtgattaatgaattgaagaaattgtccaag
ccagtcacaacgccagaagaaattgctcaggttgccacaatatcagcaaatggggataaa
gaaattggtaacataatctccgatgccatgaagaaggttggacggaaaggggttattaca
gtgaaggatggaaaaactttgaacgatgagttggaaattattgaaggtatgaagtttgat
agaggctacatctctccctacttcattaatacagccaaaggacagaaatgtgaattccaa
gatgcttatctcttaatcagtgaaaagaagatttccaccgttcaatccatagtaccagct
cttgaaattgcaaataatcaccgtaagcctttagtcattattgctgaagatctagatgga
gaagccctcagcacacttgtactaaacagattgaaggttggcttgcaagttgttgcagta
aaagcacctgggtttggtgacaatagaaaaaatcaacttaaggatatggcaattgctact
ggtggtgctgtgtttggcgaggaaggtttaagtataaatctggaagatgttcagcctcac
gactttggtaaagttggagaagtcattgtaaccaaagatgactgcttattgcttaaagga
aaaggtgataagactcagattgaaaaacggattcaagaaataattgaacaactggaaacc
acaacaagtgaatatgaaaaagagaagctgaacgagcgcctggctaagctttctgatgga
gtagctgtattaaaagttggaggaacaagtgatattgaagttaatgagaagaaagacaga
gtcactgatgccctgaatgccactcgtgctgctgtagaagaaggcatagtcctaggtggt
ggctgtgcgttgctccgttgtattccagcattggatgctttgactccagtcaatgaagat
cagaaaactggcatagagattataagaagaacactgaaaattccagctatgactattgcc
aagaatgcaggagttgaaggatcactgattgttgagaaaatcatgcaaagctcgcctgag
atcggttatgatgcaatgcttggtgacttcgtgaacatggtagaaaaaggcattattgac
ccaacaaaggttgtgagaacagcgctgatggatgctgcaggagtagcttcccttttatct
accgctgaagccgttgtaactgaaatccccaaagaagagaaggatgctgctgctgctatg
ggaggaatggggggaggaatgggaggcggtatgttctaa
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