Thamnophis sirtalis (common garter snake): 106538348
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Entry
106538348 CDS
T06107
Symbol
CNOT10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106538348 (CNOT10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106538348 (CNOT10)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106538348 (CNOT10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
ARM_TT21_N
TPR_12
ANAPC3
TPR_8
ARM_TT21
TPR_7
DUF6058
TPR_MalT
DUF948
TPR_17
Motif
Other DBs
NCBI-GeneID:
106538348
NCBI-ProteinID:
XP_013908283
UniProt:
A0A6I9XAP0
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MAADKGGDQGTEKHEGVDTSGITDQEKELSNSALQAFLAGNYDTCLQHLSCLQEINKDDY
KIVLNIAVAEFCKSNQTTTDNLKQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVILY
HLRQYTEAIIIGEKLYQFIEPFEEKFAQAVCFLLVDLYLLTCQAEKALHLLAVLEKMVSQ
GNNNKNGKAETGNNASKEANNKIESGALTEAAKSKIHQYKVRAYIQMKSLKACKREIKSV
MNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLGCI
HFAMAKHNLGIFYFKKALQENDNACAQLGTGGTDPGKKFSGRPMCTLLTNKRYELLYNCG
IQLLHIGRPLAAFECLIEAVQVYHSNPRLWLRIAECCIAANKGSLEQETKGLPSKKGIVQ
SIVGQGYHRKIVLASQSVQNIVYNDGQSSAIPVASMEFAAICLRNALLLLPEDQQEPKQE
NGSKAGNQLSGNEGSENNEACNSKSHEGDKFIPAPPSSPLRKQELENLRCSILACSAYVA
LALGDNLMALSHADKLLQQPKLSGSLKFLGHLYAAVALISLDRISDAITHLNPENVTDVS
LGISSNEQDQGSDKGENEAMESSGKQVPQCYPSSVTSARTMMLFNLGSAYCLRSEYDKAR
KCLHQAASLIHPKEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSVKMLSEIRKKPV
FQPPHLVQPIQMPTFTTVQRK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggacaaaggcggagatcagggaacagaaaaacatgaaggagtagatacttct
ggaattacagatcaagagaaagagttatcaaacagtgcactacaagcctttttggctgga
aactatgatacttgtctacaacaccttagctgcttgcaagaaataaacaaagatgattac
aaaatagttttgaacatagcagtagcagaattctgtaaaagtaatcaaacaacaactgat
aatttgaaacaaacactgaatcaactgaaaaaccaggttcattcagctgttgaggagatg
gatggtttagatgatgttgaaaacagcatgctctattataatcaagctgttattttatat
catctgcggcagtacactgaagccataataattggggaaaaactttatcaatttattgaa
ccttttgaggaaaaatttgcacaggcagtatgttttctactagttgatttatatctcctg
acttgtcaagctgagaaagccttgcatcttcttgctgtcctggaaaaaatggtttcacaa
ggcaacaataacaaaaatgggaaagctgagacaggtaataatgctagtaaggaagccaat
aacaagattgaaagtggagctctcacagaagctgcaaaatcaaagatacatcagtataag
gttcgagcttacattcaaatgaaatctctgaaagcatgcaagagggaaatcaaatcagtt
atgaatacagctggaaattctgcaccttcactttttctgaaaagcaactttgagtattta
aggggcaattatcggaaagctgtaaagctcctgaacagctcaaatattgctgaacatcca
ggatttatgaagacaggagaatgtttacggtgcatgttctggaataatcttggttgcatc
cattttgctatggcaaaacacaacttagggattttctattttaaaaaggctttgcaagaa
aatgataatgcctgtgcacagcttgggacaggtggcacagacccaggtaaaaagttctca
ggacgaccgatgtgtacgttactgaccaacaagcgttatgagttgctatataactgtggc
attcagcttttacatattgggaggccactagctgcttttgagtgcctgatagaagctgtc
caggtttatcattccaatcctcgcctgtggttgagaatagctgaatgttgtattgctgct
aataaagggagtttggaacaagaaacaaagggccttccaagcaaaaaggggattgtacag
tccattgtaggtcagggctatcatcgtaaaatcgtcttagcatcacagtctgtgcagaac
attgtttataatgacggccaatcttcagctattcctgtagccagcatggagtttgcagca
atttgcctaagaaatgctttgctgttgcttcctgaagatcagcaggagccaaagcaagaa
aatggatctaaagctggtaatcagctaagtggaaatgaaggcagtgagaataatgaagct
tgcaatagtaaaagtcatgaaggagacaaatttattcctgctccaccatcttctccattg
agaaagcaggaattagaaaacctaagatgttccatacttgcctgcagtgcttatgtagct
ttggcactgggagacaaccttatggctctgagtcatgcagataaacttcttcagcagccc
aaactctcaggatcacttaaattccttggccatttgtatgctgcagtggcccttatttct
ctggacagaatttctgatgctattactcacttgaatcctgagaacgtcactgatgtgtcc
ctgggaatttcttcaaatgagcaggatcaagggtctgataaaggagaaaatgaagccatg
gaatcttctggcaagcaagtaccccaatgttatcccagttctgttacatctgcacgaacc
atgatgctgttcaatcttggaagtgcctactgcttaagaagcgagtatgacaaagcacgg
aaatgtctgcatcaggctgcctcactgattcatccaaaagagattccaccagaagctatc
ttactggctgtatatctagagcttcagaacggcaatactcaactggcattgcaaatcatc
aaaagaaaccagcttctcccttcagtgaaaatgctctctgaaatacgaaagaaacctgta
ttccaacctccccacttggttcaacctattcagatgccaacattcaccactgttcagagg
aagtga
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