Thamnophis sirtalis (common garter snake): 106538546
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Entry
106538546 CDS
T06107
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106538546 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106538546 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106538546 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106538546 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106538546 (COL4A4)
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106538546 (COL4A4)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106538546 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106538546
NCBI-ProteinID:
XP_013908563
UniProt:
A0A6I9XBK0
LinkDB
All DBs
Position
Unknown
AA seq
1496 aa
AA seq
DB search
MKVCMEFPFSPFWPGIPSDPFGPMHPSPPGSPGSPLVPLQPSAPGFPLGPSIPGSPGIPS
RPENPGTPVGPIFPLSPSGPGRPGSPLWPFSPGKPIGPIGALGPIGPIGLPGEKGQRGDP
GLPGPLGERGNMGPTGVPGFSGLDGMPGLPGMEGPRGKPGADGCNGTRGDPGLPGGDGCI
GPKGSLGIPGQKGEKGNSIHTFIQGTTGERGDPGPQGATGPRGKKGPRGPSGFPGHPGEQ
GFQGQPGLPGDQGNPGIGVEGQKGEPGDVGPPGSPGQPLLVGPPSSRLLKGEKGIKGMPG
STGSRGLRGHKGEFAIGDKGDKGIPGFPGKQGIPGSYGSPGFPGNKGKTGTHGIPGQDGL
IGIKGDPGDIGQPGPPGPRRTALTGSKGIQGDPGDPGLPGERGTDGMPGSAGGKGRQGED
GLSFPGPKGALGVEGPQGFPGGPGLPAQSSTSPGRPGSPGLPGFPGVPGRPGLPGPPGVA
CEGRGSPGEPGAKGPKGPPGERGGKGVKGNPGNCSCGLGPCGPPGQQGLPGTPGRKGEVG
TPGKYGRKGDPGFPGRRGRPGPLGLPGPFGLTGEKGDKGDPVEVRIKGITLPSGRAYPGN
PGIPGYKGIPGPKGLRGPPGPPGPNGFDGFKGQKGRVGTSGNPGPEGLRGETGDPGEQGE
QGSSPDGPPGLPGLPGLQSPKGVPGDITYSPPGTPGKRGLPGLPGLPGLTGDPGFPGLPG
QPGTPGLPGAKGLRGQKGDTGVMGYPGSPGLVCEKMLQGLPGPSGSVGTQGPKGLKGIKG
PQGDMGAPGPAGMKGLPGAPGTQGPPGFPGLRGDPGFSGENGLPGLPGTKGDKGSQGMQG
FPGLPGNAGEMGASGVKGEEGQIGLSGPPGEFGRKGSKGSRGDPATHYGEPGKKGPIGVQ
GLPGLPGLPGDQGILGVQGEPGEQGSKGLSGNPGIPGFPGVQGAAGFPGPPGEQGEPGFL
GTQGFPGSPGNPGRKGLSGSPGVNGVNGQKGQKGLPGPPGLSEMGPPGCIGEQGPKGNRG
EPGLPGRTQVGPQGEKGLRGPPGKPGVSGPAGLMGQPPENRTCGFPGDQGSTGSDGIRGP
PGDPGPPGKTILIKGDPGDSGPLGPPGIPGPCGKQGTKGIPGNQGRKGSKGPMGKPGIQG
PSGVPGDPGAQGLQGPIGPVGHKGYRGDPGKPGRVDFSSCPKIPGPPGVLGPRGPPGFVG
LRGPIGFPGPPGNKGEEGSLGEQGLEGALGPAGPDGDQGDMGEEGNIGPQGPPGQTGIPG
QPGSASKWSSGFLLVLHSQSETEPFCPEGMTRLWTGYSLLYFEGQEKAHNQDLGLAGSCL
PVFSTMPFTYCNVNQVCYYASRNDKSYWLSSAAPLPMMPISDEEIEHYISRCVVCEAPAQ
AVAVHSQDQSIPSCPPNWRSLWIGYSFLMHTGSGDQGGGQSLTSPGSCLEDFRSAPFIEC
QGRQGTCHFFINEYSFWLTTVNNETQFLSSPVPGTIKDQQEQRRNIGRCQVCMKYG
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatgtatggaatttcctttttctcctttttggccaggtataccaagtgatcct
tttggtccaatgcatccgtctcctcctggaagccctggatcacctctggtaccattgcag
ccatctgccccaggctttcctctaggtccttccattcctggtagcccaggcattccatct
agacctgaaaatcctggaactccagttggacccatatttcctctttcaccaagtggccca
ggtagaccaggatcccctctctggcctttttctcctggcaaaccaataggtccaattggt
gctctgggtcccattggacctattggtttgccaggagaaaaaggccagagaggggatcct
ggtctacctgggccacttggtgaaagaggaaatatgggtccaactggagttccaggattt
tcaggtctagatggaatgcctgggctaccaggaatggaaggacctagaggaaagcctggg
gcagatggctgcaatggtaccagaggtgatccagggcttccaggaggagacggatgcatt
ggaccaaaaggatcacttggtatacctggccaaaaaggagaaaaaggaaattccatacat
actttcattcaaggaacaactggagaaagaggggaccctggacctcaaggcgcgactggt
cctagaggaaaaaagggacccagaggtccatctggatttccaggccacccaggtgaacag
ggttttcaaggtcagcctggtttaccaggtgatcaggggaatccaggaattggagtggaa
ggacaaaagggagagccgggtgatgtaggacctcctggttctccaggacagccattactg
gttggaccacctagttctagactgttaaagggagaaaagggaataaagggaatgcctgga
tctactggctcaagaggattgcgtggtcataaaggtgaatttgcaattggagacaagggt
gataaggggattcctggttttcctggaaagcagggaattcctggctcatatggttctcct
ggtttcccaggaaacaagggtaaaactggaacacatggaattcctggtcaagatggtttg
ataggcattaagggggatcctggagacattgggcagcctgggccaccaggacctcgaaga
actgcactcactggatcaaagggtattcaaggggaccctggagatcccggacttcctgga
gagagaggaacagatggaatgcctggttctgctggtggcaaaggaaggcaaggggaagat
ggactcagctttcctggtcctaaaggtgcattgggtgtagagggtcctcaaggcttccct
ggtggccctggtcttccagctcagtctagtacatctccaggaaggccaggatctccagga
ttacctggttttccaggagtaccaggaagaccgggcttgcctggaccacccggtgttgcc
tgtgaagggagagggtcccctggagaaccaggagctaaaggtccaaaaggaccaccggga
gaaagaggtggaaagggagtgaaaggaaatccagggaactgctcctgtgggcttggccct
tgtggtccacctggccaacaaggtctaccagggacacctgggagaaaaggagaagtggga
acacctggaaaatatggaagaaaaggtgatcccggttttcctggtagacgaggaagacca
gggcccttaggattgccaggtccatttggactgacaggtgaaaaaggagataaaggtgac
ccagttgaagtaaggatcaaaggtattactctcccaagtggaagagcatatcccgggaat
ccaggtataccaggatataaaggtataccaggtccaaaaggattaagaggtccacctgga
ccacctggacccaatggttttgatggtttcaaaggccagaaaggtagagtaggaacatca
ggcaatcctggtccggaaggtttaaggggtgagactggtgatccaggtgaacaaggtgaa
caaggttcaagtccggatggccctcctggattgccaggccttcctgggcttcaaagtcca
aaaggtgttccaggtgacattacctacagccctccaggtaccccgggcaaaagaggtctt
ccagggctaccaggtttgccaggcctaacaggtgaccctggatttcctgggcttccaggg
caacctggcacaccagggcttccaggagctaaaggtctccgaggccaaaaaggtgacaca
ggagtgatgggttatcctggatcacctggtctggtctgtgagaaaatgttgcaggggcta
ccaggaccatcaggctctgttggaacacaaggacctaaaggattgaagggtattaaaggt
cctcagggagatatgggagcaccaggcccagctggaatgaaaggattgccgggagcccct
ggaacccaagggccacctggctttccaggcttacgaggagatccaggattttcaggggaa
aacggactgccaggtcttccaggaacaaaaggagacaaaggatcccaaggcatgcaaggt
ttcccaggcctcccaggaaatgcaggagaaatgggagcatcaggtgtaaaaggagaagaa
gggcaaattggtctatctggtcctccaggagaatttgggagaaagggttccaaaggtagc
agaggtgacccagctactcattatggtgaacctggcaagaaaggccctataggagtccaa
ggcttaccaggacttcctggattacctggagaccagggtatattaggtgttcaaggagaa
ccaggagaacagggttccaaagggttgtctggaaacccagggatacctggattcccaggt
gtgcagggagctgcaggatttccaggccctccaggtgaacaaggtgaacctggttttttg
ggaactcaaggtttcccaggatcacctggtaacccaggtagaaaaggcttatctggatca
cctggagtaaatggtgtaaatggacaaaaaggtcaaaagggtttgccaggacctccaggt
ttaagtgaaatgggacctccagggtgcataggagaacaagggccaaaaggtaacagagga
gaacctgggctaccaggaagaactcaagtaggtcctcaaggagagaaaggtctaagaggt
cctcctggtaagccaggtgtttctggtcctgctggccttatgggtcagcctcctgaaaat
agaacttgtggctttcctggagatcaaggttcgactggctcagatggcattagaggccct
cccggcgatccagggcctccaggaaaaactatacttattaaaggagatccaggggactct
ggccctttgggcccacctggtattcctggtccatgcggtaaacagggaactaagggtatt
ccaggaaaccaagggagaaaagggtcaaagggtccaatggggaaacctggtattcaagga
ccatctggtgtccctggggaccctggagctcaaggtcttcagggaccaattggtcctgtg
ggccacaaaggttatagaggtgatccaggaaaacctggaagggttgatttctcatcatgt
cctaagattccagggcctcctggtgtattaggcccccgaggaccaccaggctttgtagga
ttaagagggccaattggctttcctggacccccaggaaataaaggagaagaaggctcatta
ggtgagcaaggactagaaggcgcgcttggaccagcaggacctgatggtgatcaaggtgac
atgggagaagaaggaaacatagggccacaaggtcctccaggccaaactgggattccaggg
caaccaggatcagcatccaaatggagtagcgggttcctgcttgttttgcatagtcagtca
gaaacagaaccattttgccctgagggaatgacaagattgtggactggatacagtctgctg
tattttgaagggcaggagaaagcccataatcaagatcttggtctggctggatcctgtctc
ccggtgtttagcacgatgccttttacctactgcaatgtcaatcaagtctgctactatgca
agtcgaaatgataaatcttactggctttcaagtgcagctcctttgcccatgatgcccatc
tcagatgaagaaatagagcactatattagtagatgtgtagtatgtgaagctcctgcccaa
gccgttgcagttcatagtcaagatcaatctattccttcttgtccaccaaactggagaagt
ctttggataggttactcattcttaatgcatacaggatctggtgaccaaggaggtggacag
tctctcacgtcacctggaagctgcctggaggacttccgatcagcaccctttattgaatgc
cagggtcgacaaggaacatgtcacttttttattaatgaatacagtttctggctaactaca
gtgaacaatgagacacagtttttatcatcccctgtcccaggaactatcaaagatcaacaa
gaacaacgccgaaatatcggcagatgtcaggtttgcatgaaatatggctag
DBGET
integrated database retrieval system
