Thamnophis sirtalis (common garter snake): 106538582
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Entry
106538582 CDS
T06107
Symbol
DHX58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
106538582 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tsr04054
]
106538582 (DHX58)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106538582 (DHX58)
Pattern recognition receptors [BR:
tsr04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
106538582 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_19
Tmp39
AAA_22
Cas3-like_C_2
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
106538582
NCBI-ProteinID:
XP_013908575
UniProt:
A0A6I9XBL8
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MELRDYQWEVIGPALEGKNIIICLPTGAGKTRAAVYVCKKHLESHDKNKVVVLVNTVPLL
DQHLKNEFSVLQNQFQITSVCGDSFQKLFFSDVVKTYDLIICTAQIFYNALTNQEEEMHV
ELTDFSLLVIDECHHTHKGTVYNKIMENYLDYKLKGQQGLPQILGLTASLGTGSSNTVEA
AKAHILEICANLDAERIMSIDKQNPSLDDHVPCPKKQYDLTEPRLQDPFGEKLREIMTQI
YTYLNVSDITANFGTKGFEQQIVELEMKGAKECCQKTRVCALHLRKYNDALLTNETVRMI
DAFNILDEFYLVERATKKLIKKSEQYLFQLFDENRLTLLDLAKDSRYENPKLGKLQQVLQ
DQFQELKSSRGIVFIWTRQSAYSLQEWVLGNQALRALGIKSDVLTGAGSSSQTKHMTQQE
QQDVLDRFRKGQLNLLLSTSVAEEGLDIPECNIVIRYGLMTNEIAMMQARGRARAPNSIC
SILAKTNSKEVARERLNESLEILMERAIKWVQEMPEEEYHQKIAKLQHESMISRKLRDVK
LQQQRHLHNPDSVIFCCLNCNLAVCHASDLRKIENMHHININSNFSLYYTKSPNCVTLSR
EFKDWKPGSSISCETCGQIWGMEMIYRDFTLPMLAIKNFVVETPSGRQKPKKWSKVTFEI
KDFDYSEYCASLELDTQDLGIK
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcgtgattatcaatgggaggtcattgggccagctttggaaggaaagaatatc
atcatatgcctgccaacgggcgctggaaagacccgagcagctgtgtatgtttgcaagaag
cacttggagagtcacgataagaacaaggtggttgtgttagtcaacacagtgcctctactt
gaccaacatctgaagaatgagttcagtgtcttgcaaaatcaattccaaattacatctgtt
tgtggtgatagtttccagaagctattcttctcagatgtggtaaagacctacgatctgata
atctgcacagcccaaatcttctataatgccctcaccaatcaagaagaggaaatgcatgtg
gaactgactgatttctctctgttggtgattgatgagtgtcaccacactcacaaaggaact
gtttataacaagattatggagaactacttggactacaagttgaaaggccaacagggttta
cctcagattttgggactcaccgcctctctgggtactggaagttcaaatactgtggaagca
gctaaagcccacatcctggagatctgcgctaacctagacgccgaaagaattatgtcaatc
gataaacagaatccctctcttgatgatcatgttccatgtcctaagaaacaatacgatctg
acggaaccaaggcttcaggacccatttggagaaaagctcagggaaataatgacccagatt
tatacttacctcaatgtttctgacattactgcgaactttggtaccaagggctttgagcag
caaattgtggagcttgaaatgaaaggagcaaaagaatgttgccaaaaaactcgagtttgt
gccctgcatcttcggaaatacaatgacgccctgctaaccaatgaaacggtgcgcatgatc
gatgccttcaatatactggatgagttttacctagtagaacgtgctactaagaaactaata
aaaaaaagcgagcaatatcttttccagctctttgatgagaacaggttgactctcttggac
cttgctaaagacagtcgctacgagaatcccaaacttggcaagctgcaacaagtcctgcaa
gaccagttccaagaactgaagagctcacggggcattgtgttcatctggacacgccagagt
gcctattctctgcaggagtgggtcctgggtaaccaggctttgcgtgcacttgggatcaag
tctgatgttctgacgggagctggttccagcagtcagacaaagcatatgacgcagcaagag
caacaagatgttctcgatcgcttccgcaaggggcaactcaaccttcttctttccaccagc
gtggctgaggaagggctggacatccctgagtgtaatatcgtaatccgttacgggctgatg
acaaatgaaattgccatgatgcaggccagaggccgtgcccgtgccccaaacagcatctgt
tccattttggccaagaccaacagcaaggaggtggcccgtgagaggcttaatgaatctttg
gagatccttatggagagggccataaaatgggtgcaggagatgcctgaggaagaataccac
caaaagattgcaaaattgcagcatgaaagcatgatcagcaggaaattgcgggatgtcaaa
cttcagcagcagcgccacctacacaatccagacagtgtaattttctgttgcctaaactgc
aacctggctgtctgccatgccagtgacctgcgcaaaatagagaatatgcatcacatcaac
attaattccaacttcagcctgtattacacaaagtcacccaattgtgtgacactttcccgc
gaattcaaagactggaagccaggcagttccatcagttgtgagacatgtgggcagatttgg
gggatggaaatgatctaccgggatttcacgcttccgatgttggccattaaaaactttgtg
gtggaaactcccagtggccgccagaaacccaaaaaatggagcaaagttacttttgaaatc
aaggactttgattattctgaatattgtgctagtttggaactggatacacaagacttgggg
attaaatga
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