Thamnophis sirtalis (common garter snake): 106538590
Help
Entry
106538590 CDS
T06107
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04140
Autophagy - animal
tsr04148
Efferocytosis
tsr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106538590
04148 Efferocytosis
106538590
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106538590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106538590
Membrane trafficking [BR:
tsr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
106538590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_Vps41
TPR_Vps41
ANAPC4_WD40
WD40_Prp19
Beta-prop_HPS5
Beta-prop_EML_2
TPR_7
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
106538590
NCBI-ProteinID:
XP_013908591
UniProt:
A0A6I9X2N8
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MTIHEKFLALGTHYGKVYLLDVQGNITQKFDISPVKINQISLDESGEHMGVCSEDGKVQV
FGLYTGEEFLETFDCLIKKLKNYSSTQLLLFEKNWMNRWKHSVLHEGEGPIRSVKWRGNL
IAWANNMGVKIFDMIAKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGNSVKICSV
KERHASEMRDLPSRYVEIVSQFNTEFYISGIAPLCDQLVILSFVKEISEKMERECCARPR
LDIIQPFPESCEEISSDALTVRCFQENECRDYCLEYSEGESLFYIVSPSDVVVAKERDQD
DHIEWLLEKKKYEEALMAAEISQKTIKKHKIQDIGLAYINHLLEIGDYDLAARKCQKILG
KNTNLWECEVYRFKEIGQLKAISHYLPRQDSILKPFIYEMVLHEFLESDYQGFATLIKEW
PGNLYNNPVIVHAVLDHLKKDPQNRTLLKTLAELYTYDQRYRKALEIYLTLRHKDVFQLI
HKHNLFSSIRDKIVLLMEFDSEV
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgacaatccatgagaaatttttggcacttggaacacattatggcaaagtttatttgtta
gatgtccagggaaacatcacacaaaagtttgacattagtccagtgaagatcaatcagatt
agccttgatgaaagtggtgagcacatgggtgtgtgttctgaagatggcaaggtgcaggta
tttggattgtacacaggagaagaattccttgaaacatttgattgcctaattaaaaaactt
aaaaattactcttctacccagttattgttatttgaaaagaattggatgaatagatggaag
cattctgttttacatgaaggagagggacctataagaagcgtgaaatggagaggaaatctg
attgcatgggccaacaatatgggcgtgaagatattcgacatgattgctaagcaaagaatc
accaatgtgccacgagacgatataagccttcgtcctgatatgtatccctgtagcctttgc
tggaaagataatttaacactgattattggctggggaaattcagtaaagatatgttcagtg
aaagaacggcatgcaagtgaaatgcgggatctacctagccgttacgtggaaatagtgtct
cagttcaacactgaattttatatcagtgggattgcacctctctgtgaccagcttgtcatt
ctttcatttgtaaaggagatttcagagaaaatggaaagagaatgttgtgcccgaccaaga
cttgatataattcaaccatttcctgaatcttgtgaagaaatatcttccgatgcactcaca
gtaagatgcttccaagaaaatgaatgtcgagattattgtttagaatattctgaaggtgaa
tcacttttttatattgtcagcccaagtgatgtggtagtggccaaagaacgagatcaagat
gatcacattgaatggctgttggagaaaaagaaatatgaagaagctttgatggcagctgag
atcagtcagaagactattaaaaagcacaagatacaggatataggtttagcatacataaac
catctattagaaattggagattatgatttggccgcaagaaaatgtcagaagatacttggc
aaaaacacaaatttatgggaatgtgaagtatatagatttaaagaaattggacaacttaag
gcaattagtcactatttgccaagacaagattcgatcctgaagccttttatttatgaaatg
gttctgcatgaatttctagagagcgattatcagggttttgcaacattaattaaagaatgg
cctgggaacctgtacaacaatccagtcattgtccatgctgtattggaccatctgaagaaa
gatccacagaacaggacattgctgaaaactctagcagaattgtacacctacgaccagcgc
tacagaaaggctcttgaaatttacctcacactgagacataaagatgttttccagctgatc
cacaaacacaatcttttcagttccatcagggacaaaattgttctactaatggagtttgat
tcagaggtatga
DBGET
integrated database retrieval system
