Thamnophis sirtalis (common garter snake): 106538702
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Entry
106538702 CDS
T06107
Symbol
USH2A
Name
(RefSeq) usherin
KO
K19636
usherin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tsr03037
]
106538702 (USH2A)
Cilium and associated proteins [BR:
tsr03037
]
Primary cilia and associated proteins
USH complex and associated proteins
106538702 (USH2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
fn3
Laminin_G_2
Laminin_G_1
Laminin_N
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Laminin_G_3
EGF_LMN_ATRN
Ig_J
Motif
Other DBs
NCBI-GeneID:
106538702
NCBI-ProteinID:
XP_013908755
UniProt:
A0A6I9XW15
LinkDB
All DBs
Position
Unknown
AA seq
2228 aa
AA seq
DB search
MICLVLHCGFLLHAIATSITVYYTTLPLASSQGHFPSLENVGAFKNISIVPTQATCGLPE
RSTFCQSSAVVESMNFCIPQFCIQKCLYRSSPASYAAILSEGLGNVLQQDQNDVPPGSFS
NTSILFHAEKGCFSTPCPRKLAVSFTLTVWLKPEKEGVMCMVEKTVHGQTVFKLTISEKE
TVFYYRTINGLQLPIKVMTLGRILVKKWNHLSVQVFYVIIQFFSPQPEAIRIQRKKQPSI
GWEDWQYFARDCSVFGMENNGSLTNPDSVNCVQLPRDIFEVWSGKFPQLRIQSECRCPGS
HPRVHPLVQRYCIPNGADDTTNDRVLRLNPEAHPLSYVNDNDIGTTWISSIFSTTEHLRH
GVTITIDLENGQYQVHHNRISFFINGLEDDDTAFDSRILTGLIADPSVDGEWRIGQNLNG
SEQFVGRMQDFRLYQMALTNSHPPYSHGNITFSVLTPEPNHRPGYKDFYNTPSLQEFVKV
STIKIHLFGQYHTTMPWVNFGHRYYGIDEITISGRCNCFGHADHCDTSHSPYKCLCSKES
YTEGNKCDRCQPLYNDKPFYPGDQVHAYNCKPCQCFNHAVSCHYNRTIDYFPNEYYRGGG
GVCDNCQHNTSGRNCELCNDFFYRHRDADLSTLDVCKPCECYSAGTKNGSHFCNKSFQSR
KHVIEKVVLDVLFFLPFVLPFEGLICDQCKSGYKVIQNIKQDGCEPCLCNIHGSMNDLCN
PSTGQCTCKEGVKGVHCDTCIDGFYWIDAFGCKPCSCQTAGSVSDVLCDPKTGQCICKPN
FGGRQCDDCLNGYYKEWQNNASFCMPCNCDKSGSVNGSLVCDKLTGQCPCKSGVTAHQCN
QCKPYMYNLTAQNILGCMPCDCDPLGTLPGTACDQTSGQCICQPHRQGRRCEKCKPGFYI
SAHSESCLPCLCHPSGSVSNICDTLTGLCVCHDSSVSGMKCDLCSDNYFGFNSETGKCQH
CNCHPAGAINWTCHPITGQCMCKQFAAGLKCDNCVPNASNLDVHNLFGCSKTPSQQPPPE
GQIVNSSAIRLTWNPPDSPNSNWLAYKLYRNGTQIYTTENYHPYSLQVFVDSNLLPYTFY
TYYLEASNIHGFTRSTELTYRTQPGIPLGNLYLNPVFPVGPYSISFNWTALSNDTGPIEK
YILTCISSFEHQSCGQHESLGTSITVWNLVPFKKYIFYVQACTNGGCLLSKQLSIVTAQA
PPEEQLPPVIRNINSTELAVEWVPPRKTNGVIIKYELYMKGGVQSNESHVSPENCVFQSN
GWFNLHPVEESIHEKALTPPVTSTVITDLEPFTDYEFRVLSANMAGSTFSNWTLQRTAEA
VLLMVLGKPWPTNYLSLNMLYAPRLDILSLFILQPLYVAEAQEQSYVMTGLEPYRTYSFT
ITLCNRIGCVDSKPGMGQTLAAAPVLLIAPDTEGINSSVIKITWYEPEELNGPPPIYQLE
RIDISLATSDVNVKKGIRFPGNGYYKFPNSILPADTYFTGIKISFKTAELDGLLFLSMSP
GNQEEYIVLQLRRGRPYFLFDPQGSAIAVTPENDGGRQYNDNNWHHISAVRNQALGTIII
DEQFSGSSSATSDGTIIGENAGIFVGGLPQDFIIERKDIVTKGFVGCLRNIFLQQMHHPY
EVWEPLKWEKAVEQRNVYHNWEGCPTCLEDGAHFLGKGFLELHSNIFFGGMDFEISFMFK
TDQFSGLLLFIYNKDGPDYIAVELKSGSLIFLLNNGIVSTHVDLWLGLSYCDGKWNKIIL
SKRGSVASAKMNEWTDHVMEPDLEQLFVNSPVYLGGTPVEVQEAFKELGLEEGFGGCMKD
VKFTRSAVVNLASVSSSAVRVNLDGCLSTDSAVNCRGNDSILVYQGKEKHVYDNGLQPFT
EYLYRVIASNEGGSVSSAWSRSRTRESVPQNVLTLSRIHSINGYSIEVTWDEPVGVKGVI
EKYILKASTEDGSNISVVSTEISNTSSCTGLLTGLRPFANYAVTLMACTLAGCTESSHAL
NISTPQEAPGNIQPPTSVSFPTSLWLRWAPPEEPNGIITQYILYMDAQQIYTGNETRFIV
KGMKLFSTLPVLLARINTANSKSDKAPTLHPTPRDYTPPRKGVGGIWFSSTFAVNITWQP
IFGAKIWITKNNHWNENVFEDLQSDFLSACTTGGCTISETISVKTMKTGPEGVPAPKVQS
FSSDSFNISWTKPEYMNGFITSYGLYMNGILVQNSSKVTYYISGLSPWSLHAFRVQACTS
NGCALGPL
NT seq
6684 nt
NT seq
+upstream
nt +downstream
nt
atgatttgcctggttctgcactgtggtttcctgcttcatgccattgcaacatccatcacc
gtttattatacaaccttacctcttgccagttcacagggacatttcccaagtcttgaaaat
gtgggtgctttcaagaacatttccattgtgccaacccaagcgacctgtggtttgccagaa
aggagtactttttgtcaaagttcagctgttgttgaaagtatgaacttctgtattccgcaa
ttttgtattcagaagtgtttgtataggtcatctcctgcttcctatgctgccattctctca
gaaggcttggggaatgttctccagcaagatcaaaacgatgtgcctcctggatctttcagc
aacacgagtattctttttcatgctgaaaaaggttgtttttccactccttgtcctcggaag
cttgctgtttcgtttactttaactgtatggttgaaacctgagaaagaaggtgtaatgtgt
atggtggagaaaactgttcatgggcagactgtgttcaagcttacaatttctgagaaagag
acagtgttttattatcgcactataaatgggctgcagctaccgataaaagtaatgacactg
gggagaattctggtgaagaaatggaatcatcttagcgtgcaggtgttttatgttataatc
cagttcttcagccctcagcctgaagcaatccgaatacaaagaaaaaagcaaccctccatt
ggttgggaagactggcaatactttgcgagggactgtagtgtctttggaatggagaataat
ggatcgctgacaaatccagattctgtaaactgtgtacagcttcctagagacatttttgaa
gtatggtctggaaaatttcctcaacttcgtattcaatcagaatgtcgctgtcctggaagt
cacccaagggtacatcctttggttcagaggtattgcattcctaatggtgcagatgacaca
actaatgacagagtgctcagactaaaccctgaagctcaccctttaagctatgtcaatgat
aatgatattggaactacatggatttcatctatatttagcaccaccgagcatctacgtcat
ggagtaaccatcaccattgacttagaaaatggacagtaccaggttcatcacaacagaatt
agtttctttataaatggtttggaagatgatgatacagccttcgattccagaattctcaca
gggctaatagcagatccctctgttgatggtgaatggagaattgggcaaaatttaaatggt
tcagagcaatttgtcgggaggatgcaagatttcagattgtaccaaatggcccttacaaac
agccatcctccatattcccatggaaatattactttcagtgttcttactccagaaccaaat
catcggccaggatataaagatttctacaatacaccatcacttcaagagtttgtcaaagtc
tcaacaattaagattcatctatttggccagtatcacaccactatgccctgggttaatttt
ggacatagatactatggaattgatgaaattacaatcagtggaagatgtaattgctttggc
catgctgatcattgtgacacaagtcacagtccatacaaatgtctctgctctaaggaaagc
tacacagaaggaaacaagtgtgatcgctgtcagccactgtacaatgacaagcctttctat
ccaggagatcaagttcatgcttataattgcaaaccttgtcaatgttttaaccatgctgta
agctgtcattacaacaggacaatagattactttcctaatgaatattatagaggtggtggt
ggagtctgtgataattgtcaacataacacttcaggaagaaattgtgagttgtgtaatgat
ttcttctatcggcatagagatgcggatctgtccactttggatgtttgtaaaccctgtgaa
tgttactcagcaggaaccaaaaatggtagtcacttttgcaataagagctttcaatcaagg
aagcatgtaattgaaaaagttgtcctagatgtcttattctttcttccctttgttcttcca
tttgaaggtctcatatgtgatcaatgcaagtctggatataaagtcatccagaatattaag
caagatgggtgcgagccttgcctgtgtaacatccatggttccatgaacgatttgtgtaat
ccttccactggacagtgcacttgtaaggaaggggttaaaggagttcattgtgatacctgc
attgatggcttttattggatagatgcttttggctgtaaaccttgcagttgtcagacagca
ggatcagtttctgatgtattgtgcgatcccaaaacaggacagtgtatttgcaagcctaac
tttggtggaagacaatgtgatgattgcttaaatgggtattataaagaatggcaaaacaat
gcttcgttctgtatgccatgtaactgtgataagtccggctctgtaaatggctctttagtg
tgtgacaaattgacaggacagtgtccttgcaaatctggtgtcacagctcatcagtgcaat
cagtgcaaaccttatatgtataaccttactgctcaaaatattcttggttgcatgccttgt
gactgtgatcctctagggacacttccaggaacagcatgtgaccaaaccagtggacaatgt
atttgccagcctcaccgccagggaagaaggtgtgaaaagtgtaagccaggtttttatatt
tctgcacatagtgagagctgccttccttgtttgtgccacccaagtggctcggtcagcaat
atttgtgacactctcactggcctgtgtgtttgccatgattcttctgtatctgggatgaaa
tgtgatctctgcagtgacaactattttggattcaactcagaaactgggaaatgtcagcat
tgtaattgtcatcctgctggagctattaattggacttgtcatcccattactggacaatgt
atgtgtaaacaatttgcagctggcttaaaatgtgacaactgtgttcccaatgctagcaat
ttggatgtccacaacctatttggctgcagtaaaactccttcccagcagcctcctcccgaa
gggcagattgtaaattcttcagctatcagactcacttggaatccgcccgattctcccaat
tcaaattggcttgcttacaaactgtacagaaatgggactcagatctacacaacagagaac
taccatccttacagcctccaggtctttgttgatagcaatttacttccgtataccttctat
acgtattaccttgaagcaagcaacatccacggatttacaagaagtactgagttgacctac
agaacacaacctgggatacctctaggaaatctgtatttaaatccagtctttcctgttgga
ccttattctatttcttttaactggacagccttatccaatgacactggtccaatagagaaa
tatattttgacatgcatttcttcatttgaacatcaatcttgtggccagcatgaaagcttg
gggacctctataactgtctggaatttagttccatttaaaaaatacatcttttatgttcaa
gcatgtactaatggaggctgtttgctaagcaaacaactatcaatagttactgcgcaagca
cctcctgaggagcagctacctccagtcatacgaaatatcaactctactgaattggctgta
gaatgggtcccacccaggaaaaccaatggtgtaattattaagtatgaattatatatgaaa
ggaggtgtacaatccaatgaaagtcatgtttcccctgagaactgtgttttccaaagcaat
ggatggttcaatcttcatccagtggaagaatctatacatgagaaagctttgacaccacct
gtaactagtactgttatcacggatttggagccattcacagactatgagttccgtgtttta
tcagccaatatggctggcagcacattttcaaattggactttgcaaagaacagcagaggca
gttctgctaatggtgcttggcaaaccctggccaaccaattacttatcgttaaatatgcta
tacgctcccagactagacatcttgagtctctttattttgcagcctttgtatgttgctgaa
gcccaagagcaatcctatgtaatgacgggactggagccatacagaacatactcttttacc
attactctctgcaatcgaattggatgtgtcgatagtaagccaggaatgggacaaacttta
gctgctgctccagttctgctaatagcacccgacactgaaggaataaacagttctgtaata
aagataacttggtatgagcctgaagaacttaatggacctcctccaatttatcagctggaa
agaatagatatatctttagcaacatcagatgtaaatgtaaaaaaaggcattcgttttcca
ggaaatggatattacaagtttccaaattctattttgcctgcagacacctattttacaggt
attaaaataagctttaaaacggcagaattagatggtctactttttctctctatgtcacct
ggtaatcaagaagaatacattgtccttcagttgagaagaggccgtccttactttctcttt
gatccacagggttctgctattgctgtaactccagaaaatgatggtggaaggcaatataat
gataacaactggcatcatataagtgcagtaagaaatcaagccttgggaacaataattata
gatgagcaattctcaggttcctcatcagctacaagtgatggtaccattataggagaaaat
gcaggcatttttgttggaggacttccacaagactttataattgaaaggaaagacatagtc
acaaaaggatttgtggggtgtctccgcaatatcttcttgcaacagatgcaccatccctat
gaagtctgggaacctttaaaatgggaaaaagcagtggagcaaagaaatgtttatcacaat
tgggaaggttgtcctacttgccttgaagatggagcacactttcttgggaaaggttttcta
gaactccattcaaatatcttttttggtggcatggattttgagatctcctttatgtttaaa
acagatcaattcagtggattacttctgttcatttacaacaaagatgggcctgattacatt
gctgtagaactgaaaagtggaagtctgattttcctactaaataatggcattgtctccaca
catgtggatctctggttaggactatcttactgtgatggaaagtggaacaagattattttg
tcaaaaagaggatcggtagcttcagcaaagatgaatgaatggacagaccatgtgatggaa
cctgatttggaacagctatttgtaaactctccagtctaccttggagggactccagttgag
gtccaggaagcatttaaagaactgggcttagaagagggttttggaggctgcatgaaggat
gttaaatttacacgaagtgctgtcgttaacttggcatctgtgtccagcagtgctgtcaga
gtcaatctggatggatgcctatcaactgacagtgctgtaaactgcaggggaaatgactcc
atcttagtgtatcaaggaaaagagaagcatgtatatgataatggcctgcaaccatttaca
gaatatttatatcgggtaattgcttctaatgaaggaggatctgtatctagtgcctggagc
cgtagccgcacaagagaatcagtaccacaaaacgtgctgacactctcaagaattcacagc
ataaatggttacagcattgaagttacatgggatgaaccagttggggtcaaaggtgtaatt
gaaaagtacattttgaaagcttccactgaagatggttccaacatatctgttgtcagtaca
gagatttctaatactagttcatgtacaggtctgctgacaggtttgcgtccctttgcaaac
tatgctgtaaccctaatggcttgcactttggcaggctgtacggagagctcacatgccttg
aacatctccactccacaagaagctccaggaaatatccagccacccacttctgtttcattc
cccacatctttatggttgagatgggctcctccagaagaaccaaatggcataatcacacag
tatattttatatatggatgctcaacaaatttatactggaaatgaaaccaggtttattgtc
aaagggatgaaattgttttcaacacttcctgttttgttggccagaatcaatactgctaat
tcaaaatcagacaaggctcccaccctgcatccaactccaagagactatacaccacctaga
aaaggagttggtggaatctggttttctagtacatttgcagttaacattacctggcagcct
attttcggtgccaaaatttggatcacaaagaacaatcattggaatgagaatgtctttgaa
gatttgcaaagtgactttctttctgcctgcactacaggtggatgcacaatcagtgaaact
atttcagtaaaaacaatgaaaactggcccagaaggggttccagctcctaaagtccagtct
ttttcctctgactcttttaacatttcatggactaagccagagtacatgaatggatttatt
actagttatggattgtacatgaatggcattctggtgcagaattcctcaaaagtgacctat
tatatttctggcctttctccttggagtctccatgccttcagagttcaagcatgcacatca
aatggctgtgctttgggcccactg
DBGET
integrated database retrieval system
