Thamnophis sirtalis (common garter snake): 106539145
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Entry
106539145 CDS
T06107
Symbol
NEO1
Name
(RefSeq) neogenin
KO
K06766
neogenin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04350
TGF-beta signaling pathway
tsr04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
106539145 (NEO1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
106539145 (NEO1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106539145 (NEO1)
Cell adhesion molecules [BR:
tsr04515
]
Immunoglobulin superfamily
DCC/UNC5 family
106539145 (NEO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
C2-set_2
Tissue_fac
V-set_CD47
Sp38
Herpes_UL74
EphA2_TM
Arylsulfotran_N
TM_ErbB1
Ly49
TMEM154
Motif
Other DBs
NCBI-GeneID:
106539145
NCBI-ProteinID:
XP_013909320
UniProt:
A0A6I9XXX1
LinkDB
All DBs
Position
Unknown
AA seq
1444 aa
AA seq
DB search
MGQCIPKLPEEPTVRTFTPFYFLVEPVDTLSVRASSVILNCSAYCDSPPKIEWRKDGTFL
NLVSDDRRQLLPDGSLLINSVVHSKHNKPDEGHYQCVATVESLGTIVSRTAKLTVAGLPR
FITQPESASVHRGNPIVLNCEVNADLAPFVRWELDHQPLFLDDRVLKLPSGTLIVSNATD
EDAGTYCCVIEIGGSPKYSDEAEIKVLPEPDLSSGLLFLKQPFPLTKVTGQSAVLPCVAS
GIPFPLIRWTRKEEELVTENSHKFLFLSGGMLKINDITEDDSGTYTCIADNGNETIEARA
DLTVQVPPTFLKQPANIYAHESMDIVFECDVSGKPTPTVKWVKNGDVVIPSDYFKIVNEH
NLQVLGLVKSDEGFYQCIAENDVGNIQSGAQLIILDHDVAIPTLPPTSLTSATTDHLAPA
TTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPQGDNLTYSVFYTKEMSNRERVENTSHP
GEMQVTIQSLMPETVYIFRVVAQNRHGPGESSVPLKVATQPEVQLPGPAPNIRAYATSPT
SITVTWGTPLSGNGEIQNYKLYYMEKGMENEQDIDVGGLSYTIIGLRKYTEYSFRVVAYN
KHGPGVSTQDVVIRTLSDVPSAAPQNLTLEVQNSKSIVMHWQPPPAGTHNGQITGYKIRY
RKVIRKSDVTEIIVGTQLSQMIEGLERGTEYSFRVAALTVNGTGIATDWISAETFESDLD
ETRVPEVPSSLHVRPLVTSIVVSWTPPENQNVVVRGYAIGYGVGSPHAQTIKVDYKQRYY
TIENLDPSSHYVITLKAYNNVGEGIPLYESAVTRAYTDTSEVDLFVVNAPYTPVPDPSPM
MPPVGVQASILSHDTIRITWADNSLPKNQKVSDARYYTVRWKTNIPANTKYKTANTTTLS
FLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEQVPTSPPKDVTVVSKEGKPRTII
VNWQPPSEANGKITGYIIYYNTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTAYYFKIQA
RNSKGMGPMSEAVQFRTPKAESSDKMSNDQASGSAGKGNRPVDVGTDYKIPISGSNSPHG
SPSPLEYNMLLIIIVSVGVITIVVVVIVAVFCTRRTTSHQKKKRAACKTVNGSHKYKGNS
KDVKPPDLWIHHERLELKPIDKSPDPNPIMTDTPIPRNSQDITPVDNSMDSNIHQRRNSY
RGHESEDSMSTLAGRRGMRPKMMMPFDSQPPQPVVSAHPIHSLDNPHHHFHSGNLASPTC
NYLHHQANLWPVGTSVSHSDRANSTESVRNTPSTDTMPASSSQACCADHQEPESASASYL
PSAQEEETSQNLPTAHVRPSHPLKSFAVPAVPPTGSTYDPALPSTPLLSQQASSHPVHSV
KTASIGTLGRTRPPMPVVVPSAPEVQETTRMLEDTESNYEPDELTKEMAHLEGLMKDLNA
ITTA
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggggcaatgtatacccaaattacccgaagaacctacagtgagaacttttactccgttt
tatttcctagtagaaccagtggacactctgtcagttagagcgtcttctgttatactgaac
tgttcagcatattgcgattcacctccaaaaattgaatggagaaaggacgggactttcttg
aacttggtatcagatgaccgccggcaattgctaccagatggatctttgttaatcaacagt
gttgtccattccaagcacaataaacctgatgaaggtcattaccagtgtgtggcaaccgtg
gagagtcttggcaccatcgtaagcaggacagctaagcttacagttgcagggcttccaaga
ttcattacccagccagagtctgcatctgtccatagaggaaaccccatcgttcttaactgt
gaagttaatgctgacttagcaccgttcgtcaggtgggagctcgatcatcagcccctcttt
ctggacgaccgtgtcctcaagttgccaagtggaactttaattgtcagcaatgctacagat
gaggatgctggaacttactgttgtgttattgaaattgggggctctcccaaatacagcgac
gaagcagagatcaaagttcttccagaacccgacctctcctcaggcttgctttttttgaaa
caaccctttccccttaccaaagtgactgggcagagtgcagttttaccatgtgttgcttca
ggcattcctttcccactaatccgatggacaagaaaagaggaagagctcgttaccgaaaat
tctcacaaatttctgttcctgtctgggggaatgctgaagataaatgatatcaccgaagat
gattcaggaacatatacttgcatcgcagataatgggaatgaaactattgaagctcgagct
gaccttactgtgcaggtgcctcccacgtttctgaagcagcctgctaatatttatgcacac
gaatccatggatattgtgtttgaatgtgatgtgagcggaaagccaactccaacggtcaag
tgggtgaagaacggagacgtcgtcatccctagtgactactttaaaattgtaaatgagcac
aacctacaagttttgggtttggtgaaatcagatgaaggcttttatcagtgtattgcggaa
aatgatgtgggaaatatacagtctggagcccagctgataatactggatcatgatgttgcc
atcccaacattacctcccacttcactgaccagtgccactactgaccatctagcaccagct
acaactggacctttgccttctgcccctcgagatgtggtggcgtctcttgtatctactcgt
ttcatcaagctcacatggaggacccctgcatctgatccacagggagacaatcttacctac
tcggtgttctacactaaggaaatgagtaacagggagcgtgttgaaaacacaagtcatcct
ggggaaatgcaagtgacaatccaaagcctgatgcctgaaacagtatatattttcagagtg
gtagcccaaaacagacatggacctggggagagttcggtaccattgaaagtagccacacag
cctgaggttcagcttccaggtccagcccccaacattcgtgcgtatgccacctcccccacg
tcaatcactgttacttggggtacacccttatcgggcaatggcgagatccagaactacaaa
ctgtattacatggagaagggaatggagaacgaacaggacattgatgttggaggtctttcc
tatacaataattggtttgagaaaatatacagagtatagcttcagagttgtggcctacaat
aaacatggtccaggtgtgtctactcaagacgttgtcattcgtacactgtcagatgttccc
agtgctgcaccccagaatctaacattagaagtgcaaaactccaagagcattgtgatgcat
tggcagcctcctcccgcaggaacacataatgggcaaattactggctataagattcggtac
cgaaaagtgattcgcaaaagtgatgtcacggaaatcattgtggggacacaactttcacag
atgattgaaggtttggaacgagggaccgagtacagcttccgagtggctgccttaacagtc
aatggcacaggaatagctacggattggatatcagcagaaacatttgagagcgaccttgat
gaaactcgagttccagaagtgccaagttcgttgcatgtccgtccactagtaaccagtatt
gttgtcagctggaccccaccagaaaaccagaacgttgtggtcagaggctacgccataggg
tatggcgttggcagtccccatgctcagaccatcaaggtggattataagcaacgatactac
actattgaaaatttggatcccagttcccattatgtgataactttgaaagcatataacaat
gttggtgaaggaatccctctttatgagagtgcagtgactagagcctatacagacacttct
gaagttgatttatttgttgttaatgctccatacactccagtgccagacccctcccccatg
atgccacccgtgggagttcaggcttccatcctgagccatgacaccattcgtatcacctgg
gcagacaactctctgccgaagaaccagaaggtttcggatgcccgttactacaccgtccgc
tggaaaaccaacattcctgcaaacacaaagtacaagacagcaaatacaactaccttaagc
ttcttggtcactggcttaaaacccaacacgttatatgaattctctgtcatggtgactaaa
ggccgaagatcaagcacctggagcatgacagcacacggcactacttttgagcaagttcca
acttctccaccaaaagatgtaacagtggtcagcaaagaaggaaagcccagaactatcatc
gtcaactggcaacctccgtctgaagccaatggcaaaatcacaggatacataatttactat
aacaccgatgtcaatgctgaaatacacgactgggtcattgaaccagtagtaggcaataga
ctgacccatcagattcaagagctgacccttgacacagcgtattatttcaagatccaagcc
cggaactccaaaggcatgggccccatgtcagaggctgtacagttcaggacacctaaagcg
gaatcatcagataaaatgtctaatgatcaagcatcaggatctgcaggaaaaggaaatcga
ccagtggatgttggaacagattataaaattcccatcagtggaagcaacagccctcatggc
agcccctcccccctagaatacaatatgcttctgatcatcattgtgtctgtgggagtgata
accattgtggttgtggtgattgttgctgtattttgcactcgaaggaccacctctcaccag
aagaaaaaacgagctgcttgtaaaactgtgaatgggtctcataaatacaaaggcaattcc
aaggacgtcaaaccaccggatctttggatccatcacgagaggctggagctgaagcctatt
gataaatctccagatcccaatccaatcatgaccgacaccccgatccctcgtaattcccaa
gacatcacccccgttgacaactctatggacagcaatattcatcagagacgaaactcctac
agagggcatgagtcggaggacagcatgtccaccctcgccggaagaagagggatgcggcca
aagatgatgatgccgtttgattctcaacctcctcaacctgtggttagtgctcatcccatc
cattcccttgataaccctcaccatcatttccactccggcaacctcgcttctccaacctgc
aactatctccatcatcaggcaaacctatggccagttggcacatccgtatcccattcagac
agggctaattccacagaatctgttcgaaatacgcctagcacagataccatgccagcctct
tcatctcaggcatgttgtgccgaccaccaagagccagagagtgcttcagcatcctacctg
cccagcgcccaggaagaggagacaagccagaacctgcccactgcccatgtccgcccctct
catcctctgaagagctttgctgtgccagccgtcccacccactggcagcacctacgaccct
gccttgccaagcacacctttattatcacagcaagcttctagccatccagttcattcagtg
aagacagcatcgattggaactctgggaaggactcggcctccaatgccagtggtagtcccg
agtgcccctgaagtgcaggaaaccaccaggatgcttgaagacacagaaagtaattacgaa
ccggatgaactcaccaaagagatggcccacctggaaggactaatgaaggaccttaacgcc
atcaccacagcgtga
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