Thamnophis sirtalis (common garter snake): 106539219
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Entry
106539219 CDS
T06107
Symbol
PKHD1
Name
(RefSeq) LOW QUALITY PROTEIN: fibrocystin
KO
K19865
fibrocystin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsr03036
]
106539219 (PKHD1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tsr03037
]
106539219 (PKHD1)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
106539219 (PKHD1)
Cilium and associated proteins [BR:
tsr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
106539219 (PKHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TIG
G8
CEMIP_beta-hel
Beta_helix
PA14
GLEYA
Motif
Other DBs
NCBI-GeneID:
106539219
NCBI-ProteinID:
XP_013909438
UniProt:
A0A6I9XE97
LinkDB
All DBs
Position
Unknown
AA seq
1870 aa
AA seq
DB search
MVEVKVSSMKPLYEATSLYNIFITESNAQLHGFFGAPETNNYTFXIQANGNTSLXLNLSD
DPRKKVYDKLSKTNMLEVISIPMGTTDWSTLWKEDWFHPRKPKSEKYELIAGTMYYLEAV
YHEISPNNGMGMGFQXHKTWFNPDVVSTYRRERYRIQASAIQLPEIQMLTLSGRGWFGLA
WDNVTRSIKSAMHHELEELLSVKCEIELSSANIFLQARFEQNTENPVNGGVLVSCTEPFC
GRFSNYSPKSLIKTSQLIPPYDVITYTHLCFAYKGYKSNTPYIAVSYSNTFLDTVKKHVT
CQWNPKSSPESWKFICLWRDCLYSSEFFNDLPKNSSVFLCQVDVEAPAAATETHAWFFID
EIIVSDQDVFVFQKEPWSSCPHGNLIESVLVAGIPPIFNVSFLVANYHKNLPLPSLSFEN
EFSDENFTGLNPAIISYVVFDGGVFIEPIFGDMFATPNNFTXVVVNMNDIPANCSGSCTF
QYLREMTPLVSRLFNSNKKKNLTCKILNSNYTNVLFQMNVLPVGLYKVTLLVRSFGFAVN
TSGEKCAPFIAVDSPSKGLWGGLTGSGLDGINTVLFGSQTCPINFNASSAVKMECRLPPC
SIEFELDPTTERGGEDTVNLTLMNEHGLTAFTNAFTYTSSLNPCIVSMNRNQSGITGGQL
LVIGISSFSNYTPFDVKVKIGDTAVQIQTVTDHGISVLLPSLAEGLHKLSIFLHHLPLNT
RGLEPLIQYVTEIFRIEPCCGSFLGGTLLTISEIGFSNSPALVLVLIDFQPCAIIRLTED
KILCWTPPPTQPSDTILKTLLADIEPFQMKIFKNYTFLYNLSLTPNIINIETELLNNSLH
LGVEGVSITNSVAILEHVECPLEVQXINHSISWSQCSLPLNILKSGHYVMRVLQKQMGFA
NIPAEMQHFTIYPXIKTIFPSRGSVCGGQLLTISGHSLKSWTNSAWVNLTGNLSCDVQSS
SEQSIICALFSSNPLLDDQQFPDVHQALSMTVNVNGMYSRCLGDCSFNRFANKTLVIDAV
TVRFAGILIYLLIRIQKLVWAVDEMLIEVNGHLPCNITSLNKTSIECQMHSLDAKEHSIL
VLSRSWASVCLRQKDSNIFRVTPVVLHFYPQNFSLNGGSLLTLEGAALQGRSSTSILVGN
QRCLLTKVTYWALKCLVPSGQGTAIVGLNIDTMSYPAGEISYSEEFTPVFLSLLPSTGQF
LTIMISKVRQMEDMYVFIGSSSCINVTSKSTSLQCVLPQLPTGEYNVTGGIVQRGWPPST
LVFTSVLTVITVKNSHGKYVVASGEWNPKVERDEVLIYNSSCNITMETEAEMECEGPNQP
ITAKITEIWKIWGQNTQNTFRIQFCGRWSKNLTWLNGHPPQDGDNVIVERGQILLLVTNT
SILNMLHIKGGKLAFIXPGPLELHAHSILVSDGGVLQVGSPRKPHHCMARIHLHESAYSE
EFFPYGVKFLAVRNGTLSMHESYVQHCVVLDSFAQGVSLSGISDFKIENNTFYNIMGHGI
KTGRTQIISTSNLQLWNFHISSCKDFGINIVESFGNTSVVNSVLIGYFHEKDRSCMLTGL
KTPQKHELWISRATFMNFDSHNCTAITTCSGCYQGQGGFIIRTEQVLLLNAXNWLSFPFP
HCTILKELVARHNRERCKNWREIKKMSKTGNDGFTFISNCKELVILKIKKLNNKEKSPIF
SSNLTVTNSRNKVITVNYVSDTLSMPXGWMTLLLDQEIYTSSFSSPLLQRNLQYVVTFDN
FAVGNYLLLEHEGLPVHSQLTVFCGRRKYSTKLWITQAKYIKKLLSSNKWSLAQSWNDVI
KVWGGYNKSIPSSDEDIIILPDRTVLVDMNLPPLRGLYIQGTLEFSLNTSHLLSAACIVI
AAGGVLKVGM
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagtaaaggtaagttctatgaaaccactttatgaagcaacatcattatataac
atattcattacagagtccaatgcacaactgcatggtttttttggggcaccagagacaaat
aattatacattttgaattcaggcaaatggcaacacttctttgtaactaaatctctcagat
gatcccagaaaaaaggtatatgacaagctatcaaaaaccaacatgttggaagttatatca
attcctatgggcaccactgattggtcaacactttggaaagaagattggtttcatcctagg
aagcccaaatcagagaaatatgagctaattgctggtacaatgtactatttggaagctgtg
tatcatgagatatctccaaacaatggaatgggcatggggtttcagtagcataagacctgg
tttaacccggatgtcgttagtacttatcgcagagagagatacagaatacaagccagtgct
atccagcttccagagatacagatgctgacattgtctggcagaggatggttcggtcttgct
tgggacaatgtgaccagaagtataaaatctgctatgcatcatgaactggaggaacttctt
tcagtaaaatgtgaaatagagctatcatctgctaacatttttttgcaagcaagatttgag
caaaatactgagaatccagtcaacggtggagtccttgtcagttgtacagaacccttttgt
ggaagattcagcaattacagccccaaaagccttatcaaaacatctcaattaatccctcct
tatgatgtcattacatacacacacttgtgctttgcatataaaggctacaagagcaatacc
ccctacattgcagtgtcttattccaatacctttctagatactgtgaagaaacatgtgacc
tgccaatggaatccgaaatccagtccagaaagctggaaattcatatgcctttggagagac
tgtctgtatagttctgaattctttaatgatcttcccaaaaattcttcagtgtttttgtgc
caggttgatgtagaagctcctgctgctgcaacagagacacatgcctggtttttcattgat
gagatcattgtttcagatcaagatgtatttgtttttcagaaggaaccctggtcatcttgc
ccacatgggaacctcatagaatctgttttggttgctggcatcccacctatatttaatgta
tcttttttggtagcaaattatcacaagaacctccctcttccatcactcagttttgaaaat
gaattctctgatgaaaacttcactggtcttaacccagcaataataagttatgtagtattt
gatggtggagttttcattgagcccatatttggagatatgtttgctacccccaataacttt
acataggttgtcgttaacatgaatgacattccagcaaattgttctggctcatgcactttt
cagtatctcagggaaatgacccctttagtcagtagactattcaacagcaataaaaaaaaa
aacctaacttgcaaaatcctaaattcaaactacactaatgtcctttttcagatgaatgta
ttacctgttggattgtataaggtgacattattggtaagatcttttggatttgcagtcaat
accagtggagaaaaatgtgctccttttatagctgtggattcccccagcaagggattatgg
ggaggacttacaggttcaggtttagatgggataaacacagtactctttggttctcaaact
tgtcccatcaatttcaatgccagcagtgcagtgaaaatggaatgcaggcttcctccttgc
agcattgagtttgaacttgatccaaccacagaaagaggaggagaggatactgttaatcta
accctaatgaatgaacatggattgactgcttttaccaatgcttttacctatacctcttct
ctaaatccatgcattgtgtcaatgaacagaaatcaaagtggcataacaggaggtcagctg
cttgtgataggtatttcttcattttccaactatactccatttgatgtgaaggtcaaaatt
ggggatactgcagttcaaattcaaacagtaacagatcatggaatcagtgtattgctgcct
tctcttgcagaaggattgcataagctttcaatattcctccatcatctcccactcaacaca
cgtggattggagccattaatccagtatgttacagagatcttcagaatagaaccatgttgt
ggctccttcctaggtggaacattgctcaccatttctgaaataggttttagcaacagccca
gccttggtcttggtcctgattgatttccaaccctgtgctataatccgcctaactgaagat
aaaattctatgttggaccccaccacccactcagccatctgataccattctcaaaactctt
ctggcagatatagaaccattccaaatgaaaatctttaaaaattacacttttctttataac
ttgtctttgactccaaatatcataaacattgaaacagaattattgaacaatagtctgcac
ctaggcgtagaaggagtcagtataacaaattcagtagctatcctggaacacgtggaatgt
ccccttgaagtacagtagatcaaccactctatatcttggtctcagtgttccttgcctcta
aacattctaaaatcagggcactatgttatgagagttctccagaagcaaatgggctttgcc
aacataccagctgagatgcagcattttacaatatacccatagataaagactatctttcca
tctcgtggctcagtgtgtggtgggcagttgctcacaatatctggccattctctcaaatct
tggacaaattctgcttgggtaaatctgacaggcaacttgtcttgtgatgtccaaagctcg
agtgaacagagcataatatgtgcacttttctcaagcaatccccttttggatgatcagcaa
tttcctgatgtacaccaagctcttagtatgacagtaaatgtcaatggaatgtatagccgt
tgcctaggagactgctcattcaatcgttttgcaaacaagactcttgttattgatgctgtc
actgtgaggtttgctgggatattaatttacttgttaatcagaattcaaaaattagtttgg
gcagtggatgaaatgcttatagaggtgaatggacatctcccttgcaatataacttccttg
aacaaaaccagcattgaatgtcagatgcacagccttgacgcaaaagaacatagcattttg
gtattgagcagaagctgggcttcagtctgcctgagacagaaagactccaatatcttcaga
gttactcctgtggtgctccatttttatccccagaatttcagtctcaatggcggaagcctc
ctgaccttagaaggtgcagcacttcaaggcaggagcagcacctcaattcttgtaggaaat
cagaggtgtctcctcaccaaagtcacctattgggcccttaagtgccttgtgccttcaggc
caagggactgcaatcgtggggctcaacatagacactatgtcatatcctgctggggaaata
agctacagtgaagaattcaccccagttttcctctcccttctgccttccacaggccagttc
ctcacaataatgatttcaaaagttaggcaaatggaagacatgtacgttttcattggaagt
tcttcctgcatcaatgttactagcaaaagtaccagtttgcaatgtgtgcttcctcagctt
cctactggagaatataatgtgacaggtggaattgtgcagagaggttggcccccctccact
ttggtattcacttcggtcctgacagttatcacagtgaaaaacagtcatggtaagtatgtg
gttgcttctggggaatggaaccctaaagtggaaagagatgaagttctcatctataatagc
tcctgtaacattaccatggaaactgaggcagagatggagtgtgagggacctaatcagcca
attaccgccaagattactgagatatggaaaatctggggccagaacactcagaacaccttc
cgaattcaattttgtggacgatggtcaaaaaacttgacctggcttaatggacatccacca
caagatggcgataatgtcatagtagaaagaggacagattttactactggttactaacaca
agcattcttaatatgcttcatatcaaaggtggcaagctggcatttattnggcctggtccc
ctagaacttcacgctcattccatccttgtgtctgatggaggagtacttcaggttggatct
cccaggaagccccaccactgcatggcccgtatccatcttcatgaaagtgcctattctgaa
gagtttttcccatatggagtgaaatttctggctgtgagaaatggaaccctgtccatgcat
gaatcttatgtgcagcattgtgttgtactggattcttttgctcagggagttagcctatca
ggaatatcagatttcaagattgaaaataatactttttacaacattatgggccatggaatt
aaaacaggcaggacacagattattagcaccagcaaccttcagctttggaacttccacatc
tcttcctgcaaagattttggtatcaacattgtggaaagttttggaaacacttctgttgtc
aacagtgtactaattggctacttccatgaaaaggatagaagctgtatgttgacagggctg
aaaactcctcaaaagcatgaactatggatttcacgtgcaacctttatgaactttgacagt
cacaactgcactgcaattactacctgttctggttgttaccaaggtcagggaggctttatt
attagaacagaacaagtcctcctcctcaatgccncaaactggctgtcatttccattccct
cactgtaccatcctcaaagaactcgtggcacgacataaccgcgaaagatgcaaaaattgg
agggaaattaagaaaatgagtaaaactgggaatgatggatttacctttatttccaactgc
aaggagcttgtaattctcaaaataaaaaagttgaataacaaggaaaagtccccaatcttc
tcatctaatttaactgtaactaatagtcgcaataaggtgatcactgtcaattatgtgtct
gacactttatcaatgccanatggctggatgactcttcttttggatcaagaaatttatact
tcgtcattcagcagtcctctgcttcaaagaaatttgcagtatgtagttacttttgataat
tttgctgttggcaattatctattattggagcatgaagggttgccagtccacagtcaactt
acagtgttttgtggaagaagaaaatattctaccaagttatggataactcaagcaaaatat
attaagaagctcttatccagtaacaaatggtcccttgctcaatcctggaatgatgtgata
aaggtctggggcggctacaataaaagtataccatcatctgatgaagatattatcatttta
ccagacagaactgtcttggtggatatgaatcttccacccctacgaggtctttatatccag
ggcacattggaattctcattaaacaccagtcatcttctgagcgcagcctgtattgtgatt
gctgctggtggtgtcttgaaagtgggtatgtga
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integrated database retrieval system
