Thamnophis sirtalis (common garter snake): 106539267
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Entry
106539267 CDS
T06107
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03030
DNA replication
tsr03410
Base excision repair
tsr03420
Nucleotide excision repair
tsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106539267 (RFC5)
03410 Base excision repair
106539267 (RFC5)
03420 Nucleotide excision repair
106539267 (RFC5)
03430 Mismatch repair
106539267 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsr03032
]
106539267 (RFC5)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106539267 (RFC5)
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106539267 (RFC5)
DNA replication proteins [BR:
tsr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
106539267 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
106539267 (RFC5)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
106539267 (RFC5)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
106539267 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
106539267 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_11
AAA_24
AAA_22
AAA_16
AAA_assoc_2
RuvB_N
AAA_14
AAA_5
DEAD
DUF815
ResIII
AAA_19
bpMoxR
TniB
ATPase_2
AAA_30
AAA_7
AAA_25
TIP49
PhoH
DNAX_ATPase_lid
Gp44_lid
Mg_chelatase
nSTAND3
Thioredoxin_6
AAA_3
AAA_28
Motif
Other DBs
NCBI-GeneID:
106539267
NCBI-ProteinID:
XP_013909502
UniProt:
A0A6I9X6N3
LinkDB
All DBs
Position
Unknown
AA seq
379 aa
AA seq
DB search
MGFTGDFFITSTRSVNFPILFPPQCGNSKRGRHLEERALGKPRSKHGFSSCENLHFIFIG
RVEKYRPQTLGDLISHEDILNTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYTGR
EFSSMVLELNASDDRGIDIVRGPILNFSSTRTIFKRGFKLVILDEADAMTQDAQNALRRV
IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLKHVIEKENVDVSDDG
MKALVTLSNGDMRRSLNILQSTYMAFGQVTEETVYTCTGQPLKSDIANILDWMLNLDFSS
AYRNIMELKTLKGLALQDILTEIHLFVHRVDFPTSVRIQLLIKMADVEHRLATGTNEKIQ
LGSLVAAFQVTRDLIVAEA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgggttttaccggtgacttcttcatcacttccactcgctcagtcaattttcccattctg
tttcccccacagtgtggcaattccaagagaggccggcatctggaagaaagggctcttggg
aagcctcggtcaaaacatggattctctagttgtgaaaatctgcattttatttttattggc
agggtagagaaataccggcctcagacgcttggagatctaatttctcacgaggacattctg
aataccatacagaagtttatcagcgaggatcgtttgcctcacctcctgctctatggaccc
ccagggaccggcaagacgtctacaattctcgcctgcgctaaacagctttacacagggaga
gaattcagctcgatggttttggagctgaatgcttctgacgaccgaggcattgatatcgtc
cgagggcctatcctgaatttttccagcaccagaaccatcttcaagagaggttttaagctg
gtgattctggatgaagctgacgccatgacccaggatgcacaaaatgctctcaggcgtgtg
attgagaaattcaccgagaacacccgattctgcctgatctgcaactacctctccaaaata
atcccagctctacaatccagatgcaccaggttccggtttggccctttgacgccagaactc
atggtccctcggttgaagcatgttattgagaaggagaacgttgatgtaagcgatgacgga
atgaaagccttggtgacgctgtccaacggcgatatgcgcagatctctgaacatcttgcag
agcacctacatggcgtttggccaagtgaccgaagagaccgtctacacttgcacggggcag
ccgctcaagtctgatatcgccaacatcctggactggatgctgaatctggacttcagttcc
gcctaccgcaacatcatggaactgaaaaccttgaagggcctggctttgcaagacattcta
acagaaattcatttgtttgttcacagagttgatttcccaacatctgttcggatccagctg
ctgatcaagatggcagatgtggaacaccgcttggccacagggacaaatgagaagatccaa
ctggggtctcttgtagctgccttccaggtcaccagagatctgattgtagctgaggcttga
DBGET
integrated database retrieval system
