Thamnophis sirtalis (common garter snake): 106539375
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Entry
106539375 CDS
T06107
Name
(RefSeq) polycystin-1-like
KO
K04985
polycystin 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tsr03037
]
106539375
04812 Cytoskeleton proteins [BR:
tsr04812
]
106539375
04040 Ion channels [BR:
tsr04040
]
106539375
04091 Lectins [BR:
tsr04091
]
106539375
Cilium and associated proteins [BR:
tsr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
106539375
Cytoskeleton proteins [BR:
tsr04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
106539375
Ion channels [BR:
tsr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
106539375
Lectins [BR:
tsr04091
]
C-Type lectins
Others
106539375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PKD
PKD_4
REJ
Lectin_C
Y_Y_Y
WSC
Motif
Other DBs
NCBI-GeneID:
106539375
NCBI-ProteinID:
XP_013909635
UniProt:
A0A6I9XYS7
LinkDB
All DBs
Position
Unknown
AA seq
2268 aa
AA seq
DB search
MITSADLSGNPFFCDCNLAWLPRWVEERNVKVSRPSETQCIQPLELADLLLFNVSFSDAT
CGADYVACLPDNSTGGVESVIRFTSHLPPNLTEEVCSALCYADGQDYGGFSEEADCFCGF
ALEPNVSSGCLPFCARPLAGPLCGGPTLLSRVFPAVLPVSLEAPGTLWGVYQEVAFVLHL
PVAVGTIQWDFGDETGLFNTTKTTVLQVYTLPGLFNITATVFVGNRFISAQTEIEVLASP
EEMALQCPSLLKINESLQLQMRNRGGTGLSVAYNITVQDQEPGRVVLPGCPSDSVIFPGN
RHCYWLGAEKAEWLEAQRLCQEHGSGSLAFVSSPEIQNFLVSSVTRSLDVWIGFNDVASP
SPLPQGEEGFDVQSCQNWLPGEPHPSNADHCVRMGPAGQCNTDLCMAKHSYVCEHKPQVE
ILLNADRFQLGSLAFDTYVATRSLTEREEPSAPLGPVETLVFPSLAFQQEGFLVALELVA
QKLQQPAHIRFQVHRPAHPKGCNEIRNVTDLFLVSQENETWTPMDCLVGFQWCHSANSCQ
PLESCCHQEPYANSTTQAAAGLPHPCKNQTWSVVLKTSHFMLPLGPSTRYLLLFRSKDTF
VKPNDTVSVQHDAGPGALLLCHASQKPLTQMSYFTISSLDWDPGWPVHPAPQAWQNDSRC
PIRILAAAEETIPLLPKNHSSVHRPGLYAVQATVHNGLFRRNFSCDFWALSAILGLRVIY
PPEKCGKVYMESNSTWLVVKILSGMNATSGRLGGNQSFPFGRSCPPAVTPLVAECTRDSN
DTWFSVILLEDIGHNLSTVVLWAKNAVSSQNITVRVKAEDAIRGLRVTPDPETRVLQNKR
VSYIPVMDAGSDVTFMWRLDDKSSFTFYNDVFHVLYQSPAVYKLSLTASNNVSNITVCYN
ITVEEMNRMKDLKVSEILTHVPQNSSVELSAVVTVDSAVDARFLWDFGDGDQAILEFHPP
YNESFLKPDPKIHQVQIRHNLSHIYQDPGKYSLTVVVSNEFENLTCSIPVHIYAHLTEVT
MQVASDVLVVGHPVTFEAQMMPSSFGVSYTWNFGDGSEAFVGSQAAVVHTYSSRGMYKVR
VQANNTISTVETWQHYQVFEEISGLWVSLNETIELRTPIEISASVETGDNITWIFDMGDG
TILETPVASIKHTYLKEMNCTVNVTAMNPVNSLSRAVPVQIFVLMVLKIEPSSCIREDPK
VQLTAHVSGNPQNYFFDWTFGDGSSNITVYGDPTVIHNFTLSGIFSLSLVLSSKVNKAQY
YTEICVEPEITNVTLLVRPELLWLGNETKFQVTALPPYRYRYLWDFGTNDSARFGGTEVS
YTYRSPGDYMVMVTVCNNVSFNNVSASVKVQEPVGVAKIESNGSKVLELNQVYLFWTNVT
GTNVSYLWYFGDGTSQLAKSITHSYNKSGTHTISLTCWNDVSFHEAKMNVTVKRRLQGLS
INASRTVVPLNGSVSFTATLLVGTAIRYSWILCDRCTPIPGLSTISYTFRSVGTFNVIVT
AENEIGGLQSSIFIYVLQQIEGLQITGGDFLDNIYFPTNKTLQLQAAVKDGTNISYSWTV
LKESHTVQTFTGKAVSFVILEAGVSAVHLKATNMLGSSAVNKTVEFIEEVGALKPTATPN
PAAVNASVNISASATAGSGLLYTWNFEDGLSLCTDSSTIAHSFPSPGTQTIAVVAGNKFG
SANASLVVCIQEPVVGPEIRIIRPNSSSVESGTVVNFAGELERGSDVLWMWKMQDKTISG
QRVALNFPMAGIFPVCLNASNDVSWDIACLNLTVQDAIQGLKLSVSKDVLQPGELVSFEV
EITSGSSVSYRVTIGRNHSEILSASSFTYKFSQVGEYLVRVTAENQVSVAYAEDLIVVLE
PVCGLQITDCCEQGMPAAVEKQFTARIESGSWVSYVWQFTLVKEQQRSQVHLEGQSVSYT
PEGAGQLDIHLCAFNRLSSLNVTVVIQVQDFILQLSIQPVDSFVNRTTFFEASVLPSARE
VLFWWHFGDGSPAVQTSVPSANHVYLRPGDYAVGVNATNLISFSIAHRTVTVRILECEEP
EAELALPAQVFMKRSQKNYLEAQIDLRGCTRYQTAYLWEIYKTPSCLHLEAFAKVQLVSV
DVSRPQLVIPKLTLDLGNYCFKFLVSFGDTPLSKSIFANVTVLPNKLVPIIDGGSYRVWS
STRDLILDGEKSYDPNWEDWEQTPLYYDWTCVSSSKNSPGAHGLNFSATGGLVTIPRAML
EADVEYTFDLTISKPGMDSEATNQTVLLKKGTVPIVSLECVSCKAQSV
NT seq
6804 nt
NT seq
+upstream
nt +downstream
nt
atgatcacctcagccgacttaagtggaaatccgtttttttgtgattgcaacctggcctgg
ctcccccgttgggttgaagagagaaatgtgaaggtgtcccgtccgtctgagactcagtgc
attcagccgctggaattggctgaccttctgcttttcaacgtctccttcagtgacgctact
tgcggagccgattacgttgcctgcctgccggacaacagcacaggtggagtggagtctgtc
atccgattcacttcccatttgccaccgaacctgacggaggaagtgtgcagtgcactttgc
tatgctgacgggcaagactacgggggcttcagtgaggaagccgattgcttttgcggcttt
gctctggagcccaacgtttcctctggctgtttgcccttctgtgccaggcccctggctgga
cccctctgtgggggcccaacgctgctttccagggtctttccggctgtgctgccggtgtcc
ttggaggctccggggacactgtggggtgtttaccaagaggtggcttttgttctccatctt
ccggttgcggtgggcaccattcaatgggactttggggatgaaacggggcttttcaatacc
accaagaccaccgtccttcaggtctacacattgccaggactcttcaacatcacagccacg
gtttttgtcggcaaccggtttatctccgcgcagaccgaaatcgaggtgctggcctcccca
gaggaaatggctcttcagtgtccctctttgctgaagatcaatgaaagtttacagttacag
atgaggaatcgtggaggaactggcctctcagtggcctataacatcactgtgcaggaccag
gagcctggaagagtggtcttacctggttgcccctcggacagcgtgatcttccctgggaac
aggcactgctattggctcggagcagaaaaagcagaatggctggaggcccagaggctttgc
caagagcacggcagtggaagtctggcctttgtcagcagccccgaaattcagaatttcttg
gtgtccagtgtcacccggagcctggatgtctggattgggtttaacgacgtggcaagcccc
agcccgttgccacaaggcgaggaaggcttcgatgtgcagagctgccagaactggctcccg
ggtgaaccccatccttccaatgccgaccactgtgtccggatgggtcctgccgggcagtgc
aacaccgatctctgtatggccaaacacagctacgtgtgcgagcacaagccacaagtcgag
attcttctaaatgctgaccgctttcaactgggatctcttgcgttcgacacctatgtggcc
accaggagcctgaccgagagagaagagccttctgccccattggggccagtagagactctg
gtgtttcccagcttggcatttcaacaggagggctttttagtagccttggagctggtggcg
cagaaactacagcagccagcccatatccgctttcaagtacaccgtccagcccacccaaaa
ggatgcaacgagatcaggaacgtgactgacctcttccttgtttcccaagagaatgagact
tggacaccaatggactgtctggttggcttccagtggtgccactcagccaactcatgccaa
cctctagaaagctgctgccaccaagagccatatgccaactcaacaactcaggcagctgct
ggtcttcctcacccctgcaaaaatcaaacctggagcgtggtgcttaagacgtcacatttt
atgttgcccctgggcccctccacgcggtaccttttgctcttcagaagcaaggataccttt
gtcaaacccaacgatacagtaagtgtccagcatgatgctgggcctggcgctttgctcctt
tgccatgccagccaaaagccactcacgcagatgagctacttcaccatcagctctttggat
tgggacccgggctggcctgtccaccccgctccccaagcctggcagaacgattccaggtgc
cctatcaggatcctggcggctgctgaagagaccatcccgctcctgccgaaaaaccactcc
agcgtccaccgccctggcctttatgcggtgcaggccacagtccacaacggcctcttcagg
aggaacttctcctgcgacttctgggctctttccgctatcttgggcctccgtgttatctac
ccaccggaaaaatgtggcaaagtctacatggaaagcaacagcacatggctggtggtgaaa
atcctttctgggatgaacgcaacctctggccggctggggggcaaccagagcttccctttt
ggacggagctgccccccagcggtcactccactggtggcagaatgcacaagagacagcaat
gacacctggttctctgtaatcctgctggaggacattgggcataacctgagcactgttgtg
ttgtgggccaagaatgccgtgagttcacagaacatcaccgtcagggtgaaagcggaggat
gccatccgaggattgcgtgtgacccctgacccagagaccagggtccttcagaacaagcgt
gtgagttacatccctgtgatggatgctgggtcggatgtcaccttcatgtggagactggat
gacaagagctcctttactttctacaatgacgtcttccacgtcctttaccagtccccagct
gtgtacaagctatcgcttacagcctcaaataatgtcagcaacatcacggtgtgctataac
atcactgtggaggagatgaacaggatgaaggacctgaaggtctcggagatcttgacccac
gtcccacagaacagcagtgtggaactgtcagcagtcgtgactgtggattcggctgtcgat
gccagattcctgtgggactttggtgatggtgaccaagccattttggagtttcatcctccc
tataatgagtccttcctgaagccagatcccaagatccaccaggtgcaaatcaggcataat
ctgtcccatatataccaagacccaggtaaatacagcctgactgttgtagtctccaatgaa
tttgagaacctgacctgttcaatccctgtccacatctatgctcacctaacagaagtgacc
atgcaagtagcctcagatgttttggtggtgggccatcctgtcacctttgaagctcaaatg
atgccctccagcttcggagtctcttatacctggaattttggggacgggtcagaagcattt
gtgggaagccaggccgccgtagtccacacctacagttccagagggatgtacaaggtcagg
gtgcaagcaaacaacaccatcagcactgttgagacatggcagcattaccaggtctttgaa
gagatcagtgggttgtgggtgtccttgaatgaaaccatagagcttcgcaccccgattgag
atcagcgcttctgtggaaacaggagataatatcacctggatatttgacatgggcgatggg
accatcctggagactcctgtggcatccataaagcatacttatttaaaggagatgaactgc
accgtaaatgtaactgcgatgaatccagtcaattctctgtcccgagctgtgcccgtccag
atatttgtgctgatggtgctcaagattgagccttcctcttgtatccgagaagaccccaaa
gtacagctcacagctcacgtttcaggtaatccccagaactacttttttgactggacattt
ggcgatggctcatccaacatcaccgtgtatggtgatccaacagtgatccacaacttcacc
ctcagtggaatcttctccttgtctttggtcctttccagcaaggtcaacaaagcgcagtac
tatacggagatttgtgtggagccagagatcaccaatgtgacgcttttggtaaggccagaa
ctgctgtggctcggcaacgagaccaaatttcaagtcacagccttgccgccttaccgctac
cgatatctttgggactttgggacgaacgactccgccaggtttggtgggaccgaagtgagc
tatacctacagaagtccaggggactatatggtcatggtgaccgtctgtaacaacgtctct
ttcaacaatgtctcggcatcagtgaaagtccaggagccggttggggtggccaagattgag
tcaaacggctcaaaggttttggagctgaaccaagtttatctcttctggaccaatgtcact
gggaccaatgttagttatttgtggtactttggggatgggacttcccagttggcaaaatcc
atcacccattcttacaacaagagtggtacccacaccatcagtttgacgtgctggaacgat
gtcagcttccatgaggccaagatgaacgtaaccgtgaagaggcgcctgcagggcctgagc
atcaacgccagcaggacggtggtgcctctgaacggttctgtaagtttcacggccaccctc
ctggtgggcactgccatccggtactcttggatcttgtgcgacaggtgcactcccatcccg
ggtctttccaccatttcctacacttttcgctctgttgggacgttcaacgtgattgtgacg
gccgagaatgagatcgggggcctgcagagcagcatcttcatctatgtcctgcagcaaata
gaagggctgcagatcaccggaggagacttcctggacaacatttacttccccaccaataag
acgctgcagctccaagcggccgtgaaagacggaacaaacatctcttacagctggactgtc
ctgaaggaaagtcacaccgtgcagacgtttaccgggaaggctgtctcctttgtcattctg
gaagcaggcgtctctgctgtccatctgaaagccaccaacatgctgggaagctcagctgtc
aacaagacggtggagttcattgaggaggtgggcgccttaaagccaaccgccacccctaat
cctgctgcagtcaacgcatctgttaacatcagcgccagtgcaactgccggaagtgggctg
ctgtacacttggaactttgaagatggcctttctctctgcacagactccagtacaatcgca
cactctttcccgagtccaggcacccaaaccattgctgtggtggcaggaaacaagtttggt
tctgccaatgcatcccttgtggtatgcatacaggaacccgtagtgggcccagagattagg
atcataaggccaaacagcagttctgtagaatctggcaccgtggtaaactttgctggggag
ttggaaaggggatcggacgtactctggatgtggaagatgcaggacaaaaccatctcgggc
caaagggtggctctcaattttcccatggccggaattttccctgtctgcttgaacgcttct
aacgatgtcagctgggacatagcttgcctcaatttgacagtccaagatgcaatccagggt
ctgaagctcagcgtaagcaaagacgtgctgcagccaggggaactggtctcttttgaggtt
gaaataacctctggttcctccgtgagctacagggtcaccatcggccgtaaccactctgag
atcctcagtgcttccagcttcacctacaagttcagccaggttggagaatacttagtgaga
gtaactgcagagaatcaagtaagtgtggcttacgcagaggatcttatcgtggtgctggag
cccgtgtgtggcctccagatcaccgattgctgcgaacaaggaatgcccgctgcggtggag
aagcagttcacggctcggattgagagcggctcatgggtgtcttacgtctggcagttcacc
ttagtaaaagagcagcaacgttcccaggttcacttagagggccaaagtgtctcttacacc
ccagaaggagcggggcagctggacatccacctgtgtgctttcaaccgtctgagcagcctg
aacgtaactgtggtgatccaagtccaagatttcatcctccagctgtccatccagcctgtt
gattctttcgtcaaccgcacaactttcttcgaagcatctgtgctgcccagtgccagagaa
gtcctcttctggtggcattttggagatggctctccagcagtgcaaacgagtgtgccgtct
gccaaccatgtttatctgaggcccggtgattatgcggtgggtgtgaatgccaccaacctc
atcagcttctccattgcccaccgcacggtcacggtccgtattctggagtgcgaggaacca
gaagctgagcttgctttacctgctcaggtgtttatgaaacgatcccagaagaattatctg
gaggcccagattgacttgcgaggatgcaccaggtaccagactgcctacctctgggagatc
tacaaaaccccgagctgcctacacctggaggcttttgccaaagtccagttggtcagcgtg
gacgtgagccgaccacagttggtcatcccaaagcttactctggatctcggcaactactgc
ttcaaattcttggtctcttttggtgatactcctctgtccaaaagcatttttgccaatgtg
acagttttgcccaataaactggtacccatcattgatggaggatcgtatcgtgtctggtcc
agcacccgggacttgatcttggatggcgagaaatcctacgaccctaactgggaagattgg
gaacagacaccgttgtattatgattggacttgcgtatcatcttccaaaaattcacctggt
gcacatggtctcaacttcagtgccacaggaggactggtcaccatccctcgggccatgctg
gaagcagatgtggaatacacgtttgacctcaccatctcgaaaccaggcatggattcagaa
gccacaaatcaaaccgtcttgctaaagaaagggacggtccccatcgtgtccctggagtgc
gtctcctgcaaggcgcagtctgtc
DBGET
integrated database retrieval system
