Thamnophis sirtalis (common garter snake): 106539382
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Entry
106539382 CDS
T06107
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106539382 (PNN)
03015 mRNA surveillance pathway
106539382 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106539382 (PNN)
03041 Spliceosome [BR:
tsr03041
]
106539382 (PNN)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106539382 (PNN)
Spliceosome [BR:
tsr03041
]
Complex C
Other components
EJC/TREX
106539382 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
106539382
NCBI-ProteinID:
XP_013909649
UniProt:
A0A6I9X2Y9
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKHVDENIRKLTGRDPNDVRPAQGRLLAIAGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGSTNRLAGERRTRRESRHESDAEDDDVKKPALQSSVVATS
KERTRRDLIQDQTMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNVKIIKYIRTKTKPH
LFYIPGRMCPATQKMFDDSQKKLNALFENRRTEFAEQINKMEARPRRQSMKEKEHQEVQK
EEKKEDQNKEQEEGKVVQQVEEMETGNKSNDIEMEEVREEKELGVSHSDGEIEQEEEEQK
EEMEVKVEEEAEIKENDRQPDNQTEEVDLVKGESEGIQPIDGEQDVMEINETDCTEPLEN
EISTEVEPEMEYNAQPEQEGPTVALEKEEPSKPEVDAEPEESEEKEPESIPVSEAEVQPQ
SEAVIWPQPLPLLESTQDQAPQLDKESLVSEKLPEMQADQVQAVSVEIKNKIRSRSRGRA
RNKTSKSRSRSTSSSTSSTSSTSSSSGSSSSSGTSSSRSSSSSSSSSGTSSRESSSSSSS
SESRSRSRGRGHNRDRKHRRSLERKRRDNSGVDRSHKSSKGSRRDAKGSKDKSSRSDRKR
SISESSWSGKRTSRNERDRKSDRKDKRR
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagctgtgcgggctctacaggagcagctggagaaggccaaggaaagcctcaag
cacgtcgatgagaatatccgcaaactcacagggcgggaccccaacgatgtgcggcccgct
caagggagactgttggccatcgcaggccctggtggaggtaggggacgcggaagcctatta
ctgaggcgtggattctcggatagcggaggaggacccccagccaaacagagggatctagaa
gggtcgacgaatagattggctggtgaacgtcggacaaggagagaatcacgccatgaaagc
gacgcagaggatgatgatgttaaaaaaccagcgttgcagtcctctgttgttgctacctcc
aaagagcgaacacgccgagaccttattcaagatcaaactatggatgaaaaagggaagcaa
aggaatcggcgtatatttggcctgttgatgggaactcttcagaagtttaaacaagaatcg
acagttgctactgagaggcaaaaaagaagacaagaaattgagcagaaacttgaagtgcag
gcggaagaagaaagaaagcaggttgaaaacgaaaggcgagaactctttgaggaaagacgt
gctaaacaaacagaactacggttattggaacaaaaagttgaacttgctcagttgcaagaa
gaatggaacgaacataatgtcaaaataattaaatatataagaacgaagacaaaacctcat
ctgttctatatacctggcagaatgtgccctgctacccagaagatgtttgatgattcccaa
aaaaagttaaatgcactgtttgaaaatagacgcactgaatttgctgagcaaattaataaa
atggaagccaggcccagacgacagtctatgaaggaaaaagaacaccaggaggtacagaaa
gaagaaaagaaggaagaccagaacaaggagcaggaagagggtaaggtggtacagcaggtg
gaggagatggagacaggtaataagagcaatgatatagaaatggaagaggtaagggaagaa
aaggagttaggtgttagtcatagtgatggggaaatagaacaggaagaggaagagcaaaaa
gaggaaatggaagttaaagtagaagaggaagcagaaattaaagaaaatgacaggcagcca
gataaccaaactgaggaagttgacctagtgaaaggagaaagtgaaggtattcagccaata
gacggtgagcaggatgtaatggaaattaatgagacagattgtacagagccattagaaaat
gaaattagcacagaagttgaaccagaaatggaatataatgcacagccagaacaggaaggg
cctacggttgccctggaaaaagaggaacccagcaagccagaagttgatgctgagccagag
gagtcagaagagaaggagcccgaatccattccagtatcagaggctgaggtgcagcctcag
tcagaggctgtgatttggccacagcctttgccacttttggaatccactcaagaccaagca
ccacaattagacaaagaatctctagtgtctgaaaagctgcctgaaatgcaggcagatcaa
gtccaggcagtaagcgtagaaattaagaacaaaattaggagcagaagcagaggtagggca
agaaacaaaaccagtaagagtcgaagtcggagtactagtagtagcactagtagtactagt
tctacaagtagtagcagtgggagtagttctagcagtgggacaagcagtagtcggagcagt
tccagcagcagcagcagtagtggtactagtagtcgagaaagttctagtagttctagtagc
agtgagagtagaagtcgaagcagggggcgaggacataatagagatagaaagcataggagg
agtttggaacggaagcgaagggacaattcaggagtagatagaagtcacaagtcttcaaaa
ggtagcagaagagatgcaaaaggatcaaaggataaaagttcaaggtcggacagaaaaagg
tctatatcagaaagtagttggtcaggcaaaaggacttcacggaatgaaagagaccgtaaa
tcagacaggaaagacaaaaggcgttaa
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