Thamnophis sirtalis (common garter snake): 106539455
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Entry
106539455 CDS
T06107
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03018
RNA degradation
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106539455 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
106539455 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106539455 (LSM5)
03041 Spliceosome [BR:
tsr03041
]
106539455 (LSM5)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106539455 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
106539455 (LSM5)
Spliceosome [BR:
tsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106539455 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
106539455
NCBI-ProteinID:
XP_013909726
UniProt:
A0A6I9X646
LinkDB
All DBs
Position
Unknown
AA seq
57 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEL
NT seq
174 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaacgcgactaccaacccgtcccagcttttgccgcttgaactggtggacaag
tgtataggctctcgtattcatattataatgaaaagtgataaagaaattgttggcacactc
ctaggatttgatgattttgtcaacatggtattagaagatgtcactgaattgtaa
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