Thamnophis sirtalis (common garter snake): 106539495
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Entry
106539495 CDS
T06107
Symbol
NOTCH1
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
106539495 (NOTCH1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
EGF_2
Notch
Ank_2
EGF_3
Ank
Ank_4
EGF_DL_JAG
Ank_3
Ank_5
Gurken_M
SPE9_EGF_3rd
EGF_Teneurin
cEGF
CagA_N
Motif
Other DBs
NCBI-GeneID:
106539495
NCBI-ProteinID:
XP_013909768
UniProt:
A0A6I9XFD7
LinkDB
All DBs
Position
Unknown
AA seq
2170 aa
AA seq
DB search
MQPLRGRSRRRFPGLPLLRLLLLAVLPASAAGLRCTQPSESCLNGGKCKTYQNGTGTCQC
SKDFTGQRCQFPNLCLSSPCNNGGTCQPVVEGSTPDFICSCRLGYIDKLCLTIEENACLS
SPCRNGGSCDLVTLTEYKCRCPPGWSGKTCQQADPCASNPCANGGQCVPFESSYVCRCPQ
GFHGATCKEDLNECSRTFPICKNGGTCINEIGSYQCHCRPAFTGPNCDDRYVPCNPSPCQ
NGGTCQQTGDVAYECTCLAGFTGQNCEENLDDCPGHNCRNGGTCVDGVNTYNCQCPPEWT
GQYCAEDVDECQLIPNACQNGGTCYNTQGAYNCVCVNGWTGEDCSENIDDCASAACSPGA
TCHDRVASFYCECPHGRTGLLCHLEDACISNPCNEGSNCDTNPVTGRAICNCPSGYMGPA
CNKDVDECLLGANPCEHGGKCLNTEGSFQCQCQMGYSGPRCEIDVNECSSNPCQNDATCL
DQIGVFQCICMPGYEGVYCEINTDECASSPCLHNGNCVDKINEFACVCPVGFNGHLCQHD
IDECASTPCKNGAKCVDAPNAYVCECTEGFSGTHCETDINECDPDPCHYGTCRDGIATYT
CLCQPGYTGRLCDTNINECQSQPCKNGGTCQDRDNAYTCSCLRGTTGPNCEINLDECASN
PCDYGKCVDKINGYECACEPGYTGRMCSINVDECESHPCHNGGTCKDGINGFTCLCPEGF
HDPMCLSEVNECSSNPCVHGRCHDGLNGYKCNCDPGWSGTNCDINNNECESNPCMNGGTC
KDMTSSYICTCQEGFSGPNCQININECASNPCLNQGTCIDDVARYQCNCLPPYTGLTCRE
VLAPCADGPCKNGGQCRESEDYESFLCTCLPGWQGQTCEIDINECVKSPCRNGATCQNTN
GSYRCLCKAGFTGDSCETDIDDCQPNPCHNGGSCSDSVNGFSCNCLAGFQGPECQEDVDE
CASDPCKNGANCTDCVNSYTCTCPSGFSGIHCEHNTPDCTESSCFNGATCVDGINTFTCV
CPPGFTGIYCEHDINECDSRPCMNGGTCQDSYGTYKCTCLQGYTGLNCQSLVNWCDSSPC
KNGGKCWQISNHYRCECPSGWTGLYCDVPNVSCEVAARRQGLDVARLCRNSGLCVDRGNT
HFCHCQPGYTGSYCEEQVDECSPNPCQNGATCTDYLGGYSCECVAGYHGRNCSEEIKECL
SHPCQNGGTCIDLLNTYKCSCPRGTQGIHCEINIDDCSPATDPRSQTPKCFNHGKCIDKV
GGYSCICLPGFVGERCEGDVNECLSNPCDPRGTQNCVQRVNDYKCECRPGYTGRRCEAVF
NGCQNRPCKNGGSCAVASNTKQGYICKCPLGLDGATCENHLHSCGMLHCLNGGTCLPTSR
QPRCLCTPGFTGPECQFPSHSPCHSGPCYNEGTCQFTPEPPHYRCLCPVNFNGLNCHILD
FEFPGGPGQDITPPLVEEKCEIPGCPSLAGNKICDTKCNNHACGWDGGDCSLNFNDPWKN
CTQALQCWNYFNDGKCDVQCNNSGCLYDGFDCQKVELQCKPLKNASNGTLMDDNQNEWGD
EETLHTKKFRVEEQVMLPDDQTDHRQWTQQHLDAADLRISSMAPTPPQGEIDADCMDVNV
RGPGQRPGNQPILIRNRATDLDARMNDGTTPLILAARLAVEGMLEDLISCHADVNAVDDL
GKSALHWAAAVNNVDAALALLKNGANKDMQNNKDETPLFLAAKEGSYETAKVLLDSYANR
DITDHMDRLPRDVAQERMHHDIVRLLDEYNLVRSPPLHNGGPLGGPTLSPPLCSPSGYLG
NLKPGLQGKKARKPSAKGLSCNGKEPKGLKAPRKKSQEVKGCLLDGSGVLSPVDSLESPH
GYLSDVASPPLMTSPFQASPSMPLSHLPGMADSHLSISQLNLVSKADLGLGASQMQPYEP
GPPRLSHLPASSASALLGRASLNFTVSGSQCEWLNRLQNSLVPGQYNPLRSALPQGTHPA
SQALPHGMLAPLHSGLSGAPLAPMMTYQAVPGGLLPTHSQPHLLQPQQQQQPPPQGHGGA
TNTAPQVGASFLGNELSQAELQQQQMNIHSILPQDTQVLATSLPPGLSQALTTPQFLTPP
SQHSYPSPMDHTPSHPLQGPDHPFLTPSPESPDQWSSSSPHSNVSDWSEGISSPPTSVQP
QVGRIPEAFK
NT seq
6513 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccctgcggggacggagccgccgccgcttcccggggttgccgcttctgcggctg
ctgctgctggccgtcttgcccgcctccgctgcaggtttgcgatgtacccagccttccgaa
tcctgcttgaatggtggaaagtgtaaaacctatcaaaacggaacagggacatgtcaatgc
tccaaggacttcactggccagcggtgccagttcccgaatttgtgcctcagctccccctgt
aacaacggcggcacctgtcaacccgtggttgagggcagcacgcccgacttcatctgttcc
tgccgcctgggctacattgacaagctgtgcctgaccattgaagagaacgcctgcctgagc
agcccctgtcgcaatggagggagctgtgacctcgtcaccttgaccgagtacaaatgccgc
tgccctccaggctggtcaggcaagacgtgccagcaggccgacccctgtgcctccaacccc
tgtgccaacggcgggcagtgcgtgccctttgagtccagctatgtgtgcaggtgtccccag
ggcttccacggggcgacttgcaaggaagacttgaacgagtgcagccggacattccccatc
tgcaagaatggcggcacctgcatcaacgagattggctcctaccagtgccactgccggccg
gccttcaccgggcccaattgcgatgaccgctacgtcccctgcaacccctccccttgccaa
aatgggggcacctgccagcagaccggagacgtggcctacgagtgcacctgccttgcaggt
ttcacaggccagaactgcgaagagaatctggacgattgtcctgggcacaactgcaggaat
ggaggcacctgtgtggatggggtgaacacctacaactgccagtgcccacctgaatggaca
ggccagtactgtgccgaagacgtggacgaatgccagttgattcccaacgcttgtcagaat
ggtggcacctgctacaacacccaaggggcctacaactgtgtctgtgtgaatggttggacg
ggggaggactgcagcgagaacatcgacgactgtgccagtgccgcctgctctccaggggcc
acttgccatgaccgggtggcctctttctactgcgagtgcccacatggtcgcacaggcttg
ctgtgccacctggaggatgcctgcatcagcaacccttgcaacgaaggctccaactgcgac
accaaccctgtgacagggagggctatttgcaactgcccctcagggtacatggggcctgcc
tgcaacaaggacgtggacgagtgcttgctgggtgccaacccctgcgagcatggcgggaaa
tgcctcaacacggagggctccttccagtgccagtgccagatgggctactcgggtccccgc
tgcgagatagacgtcaacgaatgctcctccaacccctgccagaacgatgccacctgcttg
gaccagattggggtcttccagtgcatttgcatgccaggttacgagggggtctactgtgaa
atcaacacagacgaatgtgccagcagcccctgcctccacaacgggaactgcgtggacaag
atcaacgaatttgcctgcgtgtgccccgtggggtttaatggccacctgtgtcaacacgac
attgacgaatgcgccagcactccctgcaagaacggagccaaatgtgtggacgcaccaaat
gcttacgtgtgtgaatgcacagaaggattttcgggcactcactgcgagacggacatcaat
gaatgtgaccctgacccttgccactacggcacgtgccgggatggcattgccacctacacc
tgcctctgccagcctgggtacactgggcgcctttgtgacaccaacatcaacgagtgccag
agccaaccttgcaagaacggaggcacctgccaggacagggacaacgcctacacctgctcc
tgcctgcgaggcactacagggcccaactgtgagatcaacctggacgaatgtgccagcaac
ccctgtgattatggcaaatgtgtggacaagatcaatggctacgaatgtgcctgtgagcca
ggatacacagggaggatgtgcagcatcaacgtcgacgagtgtgaaagccacccttgccat
aacgggggcacctgcaaggatggcatcaacgggttcacttgtctttgcccggaaggcttc
cacgaccccatgtgcctctcggaagtgaatgagtgcagcagcaacccttgtgtccacggg
agatgccacgatgggctgaatggctacaagtgcaattgcgacccgggctggagtgggaca
aactgtgacatcaataacaacgagtgcgagtccaacccctgtatgaatggtggaacctgc
aaggatatgaccagcagctacatttgcacctgccaggaaggattcagtggacccaactgc
cagatcaacatcaacgaatgtgcctccaacccttgtctgaaccagggaacatgcattgac
gacgttgctcgctaccagtgcaactgcctcccgccctacacaggtctcacctgccgggag
gtgctggcgccctgcgcggatggtccctgcaagaatggggggcagtgcagagagtcggag
gactacgagagctttttgtgcacctgccttccgggctggcaagggcaaacctgtgagatt
gacatcaacgagtgcgtcaagagcccctgtcggaatggcgccacgtgccaaaacaccaac
gggagctaccgctgcctgtgcaaagctggtttcacaggggacagctgtgaaactgacatc
gatgactgtcaacccaatccctgccacaatgggggctcctgttctgacagcgtgaacggc
ttctcctgcaactgcctggcgggcttccagggccccgaatgccaggaagacgtggacgaa
tgtgccagcgacccctgcaagaacggggccaactgcacggactgcgtcaacagctacacc
tgtacctgcccgtcgggcttcagtgggatccactgtgagcacaacaccccagactgcacg
gagagctcctgcttcaacggggccacctgtgtggatggcatcaacaccttcacatgtgtc
tgcccacccggcttcactggcatttattgtgagcacgacattaacgagtgcgactccaga
ccctgcatgaatggggggacttgccaggacagctacggaacttacaaatgcacctgcctg
cagggatacactggactcaattgccagagcctggtcaactggtgcgactcgtctccctgt
aagaacggagggaagtgctggcagatcagcaatcactaccgctgcgagtgcccgagcggc
tggaccggcctgtactgcgatgtacccaacgtctcttgcgaggtggccgcacgacggcaa
ggactggacgtggctcgcctgtgcagaaactccggcctctgcgtggacaggggcaacacc
cacttctgccactgccagcctggctacacaggcagctactgtgaagagcaggtggacgag
tgctcccccaacccttgccagaacggggccacctgcacggactatctgggcggctattcc
tgcgagtgcgtggccggctaccacgggcgaaattgctcggaggagatcaaggaatgtctt
tctcatccctgccaaaatggcggcacttgcattgatctgctcaacacctacaaatgctct
tgtccccgtggaactcaaggcatccactgcgagatcaacattgatgactgcagccctgcc
accgacccccggagccagacccccaagtgcttcaaccacggaaagtgcattgacaaggtg
gggggctacagctgcatctgcctgccaggcttcgttggggagcgctgtgagggagacgtt
aacgagtgcctctcgaacccctgcgacccgcgagggacccagaactgtgtgcagagagtc
aacgattacaagtgtgaatgccgcccgggatacacaggacggcgctgtgaagcggtgttc
aacggctgccagaacaggccctgcaagaacgggggcagctgcgccgtggccagcaacacc
aaacagggctacatctgcaagtgtcctctgggcttggatggcgccacgtgtgaaaaccac
ctgcacagctgcgggatgctacactgcctgaacggtggcacctgccttcccacctccagg
cagcccaggtgcctctgcacaccgggtttcactggtcccgagtgccagttcccctcgcac
agcccatgccactcgggcccctgctacaacgagggcacctgccaattcaccccggagcca
ccccactaccgctgcctttgccccgtcaacttcaacggcctcaactgccacatcctggac
tttgaattcccgggggggcccggccaggacatcacccctcccctggtggaggagaagtgc
gaaatccctggctgccccagcctggccggcaacaagatctgtgacaccaaatgcaacaat
cacgcctgcggttgggacggcggggactgttcgctcaacttcaacgacccctggaagaat
tgcacccaggccctgcagtgctggaactacttcaacgacgggaaatgtgacgtccagtgc
aacaacagcggctgcctctacgacggctttgactgccagaaggtcgagctgcagtgcaaa
cccctgaaaaatgcttcgaatgggactctgatggacgacaaccagaacgagtggggagac
gaagagacgctccacaccaagaaattccgagtagaggaacaggtcatgctgcccgatgac
cagactgaccaccggcagtggacgcagcagcacctggacgcggccgacttgcgcatttcc
tccatggcccccacccctccccagggggagatcgatgccgactgcatggacgtcaatgtt
cgagggccagggcagagacctggaaatcagccgatcctgatccggaacagggccaccgac
ttggatgcgcgcatgaatgacgggaccacgcccctgattttggccgcccgcttggcggtg
gaaggcatgctggaagatctcatcagctgccatgctgatgtgaacgctgtggatgaccta
gggaagtcggccctgcactgggcggccgctgtgaacaatgtggacgctgccctggcgctg
ctgaagaacggggccaacaaggacatgcagaacaacaaggacgagacccccttgttcctg
gcggccaaagaaggcagctacgaaacggccaaagtcctgctggacagctacgccaaccgg
gacatcacggatcacatggaccgcctgccccgggacgtcgcccaggagcgcatgcaccac
gacattgtccgcctcctggacgagtacaacctggtgcggagcccacccttgcacaacggg
gggcctctggggggccccaccctctccccgccactctgctcgcccagcggctacctgggc
aacctgaagcccggcctgcagggcaagaaggcccggaagcccagcgccaaagggctgagc
tgcaacgggaaggagcccaaggggctaaaggccccccggaagaagtcgcaggaggtcaag
ggctgcttgctggacggctccggcgtcctctcaccggtcgactccctggagtccccgcat
ggctacctgtcggacgtggcctcccctcccctgatgacctcccccttccaggcctcccct
tccatgcccctcagccacctgccgggcatggcggactcccacctcagcatcagccaactc
aacctggtcagcaaggcggatctgggcctgggggccagccagatgcagccctacgagccg
gggccccctcgcctctcccacctgcccgcctccagcgccagcgccctcctgggaagagcc
tccctcaacttcaccgtcagcgggagccagtgtgagtggctgaatcgcctgcagaacagc
cttgtgcccgggcagtacaatcctctgaggagcgcccttccgcagggcacccacccggcc
agccaggccctgccccacgggatgctggcgcccctgcacagtggcctctccggcgcccct
ctggctcccatgatgacctaccaggcggtccctgggggccttctgcccacccactcccag
ccacacttgctgcaaccccagcagcagcagcagcccccaccgcaaggccacggcggggcc
acgaacactgccccccaagtgggggccagcttcctcgggaacgagctgagccaggcggag
ctgcagcagcagcaaatgaatatccactccatcctgccacaggacacccaggtgctggcg
acttccctgccccccggcctgtcccaggccctgaccaccccccagttcctgactccgcct
tcccagcacagctacccctcccccatggaccacacacccagccacccgctccaggggccc
gaccaccccttcctcacaccctcgccagagtctccggaccagtggtcaagctcctccccc
cattccaacgtctcggattggtcggaagggatctcgagcccgcccaccagcgtgcagcct
caggtggggcgcatcccggaagctttcaagtaa
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integrated database retrieval system
