Thamnophis sirtalis (common garter snake): 106539560
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Entry
106539560 CDS
T06107
Symbol
STAU1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tsr01009
]
106539560 (STAU1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106539560 (STAU1)
Protein phosphatases and associated proteins [BR:
tsr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106539560 (STAU1)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
106539560 (STAU1)
mRNA cycle factors
Stress granule specific factors
106539560 (STAU1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Staufen_C
dsrm
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
106539560
NCBI-ProteinID:
XP_013909840
UniProt:
A0A6I9XZB1
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MEINMSQVQIQNPTATLSGSQILSKNQSLAQPLSIPSPTSSLPSENAGRPIQNSALPSAS
VTSTSVAAVSSNMANPKEKTPMCLVNELARFNKIQPEYKLLSEQGPAHSKVFTVQLTLGD
QHWEAEGTSIKKAQHAAAAKALEGTRFPKPTARPSRNEGKNPDSVTPTVELNALCMKLGK
KPMYKPIDAYTEMRSTYNYNMRGGAYPPRYFYPFPVAPWLYQVELSIGGQQFHGKGRTRQ
AAKHDAAAKALKILQNEPLPEKPEINGREPDDENLNKSEISQVFEIALKRNLPVNFEFLP
LKQVTRESGPPHMKSFVTKVSVGEFMGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVEK
MKPRIKKKTKTIVKTSPEYGQGMNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQ
VKVGMHTAEGMGTNKKVAKRNAAENMLELLGFKVPQPQPPKPALKTEEKTPVKKPGDGRK
VTFFEPGSEETSNSNKEDEFRMPYLSHQQLPAGILPMVPEVAQAVGVNQGHHTKEFSRAA
PNPAKATVTAMIARELLYGGTSPTAETIIKNSSLGHVPHGPLTRPSEQLDYLSGVQGIQV
EYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQQSTEMP
RTGNGPMSVCVKQEMESDPLLKPASSNTLGQTLDTTA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaacatgtctcaagttcaaattcagaatccaactgctactctttctggcagc
caaatactaagcaagaaccaatctctcgcacagcctttgagtattccttctcccactagt
tctttgccctctgaaaatgcgggtagacctattcaaaattccgctttaccctctgcatct
gttacatctactagtgttgctgcagtttcttctaacatggcaaaccccaaagagaaaaca
cccatgtgtcttgtgaatgagttagcccgtttcaacaagattcagcctgaatataaactt
ttgagtgagcagggtccagctcactcgaaggtgtttacagtgcagctgactcttggggac
cagcattgggaagctgaaggaactagtattaagaaagctcaacatgcagctgctgccaaa
gctttggaagggacaagatttcctaaacctacagctcgcccatctcgcaatgaaggaaag
aatccagatagtgtaacccccacagtggagctgaatgcgctttgtatgaaactgggaaag
aaacctatgtacaagcctatagatgcttacacagagatgaggtccacctacaactacaat
atgagaggcggtgcttatcccccacggtacttctatccatttcctgtagcaccatggctc
tatcaagtagagctttctatagggggacagcagtttcatgggaaaggtagaacacgacag
gctgctaagcatgatgcagctgctaaagcactgaaaatcctgcaaaacgagcccctgcct
gagaaacccgagataaatgggagagaaccagatgatgaaaatctcaataaatctgaaata
agccaagtgtttgagattgcacttaaaaggaacttgcctgtgaattttgagtttttacct
ctgaaacaggtgacccgggagagtggtcccccacatatgaagagctttgtaacaaaggta
tctgtgggcgagttcatgggtgaaggtgaaggaaagagcaagaagatttcaaaaaagaat
gcagctattgcagtcctagaggagttgaaaaagctgcctccccttcctacagttgagaaa
atgaagccacgaatcaaaaagaaaacgaaaacaatagtcaagacgagtcctgaatacggc
caaggtatgaatcctattagccgtctggctcaaatacaacaagcaaagaaagagaaagag
ccagagtatatgctcatcacagaacgtgggttgccaaggcgtcgggagttcgttatgcag
gtgaaagttggcatgcacacagctgaaggaatgggaacgaataagaaagtagccaaacgc
aatgcagctgaaaacatgctggagctcttaggatttaaagtcccccaaccacagccccca
aaaccagcactaaagacagaagaaaagacgccagtaaaaaagccaggtgatggaagaaaa
gtaactttttttgaacctgggtctgaagaaacatctaatagtaataaagaggatgagttt
aggatgccttatctcagccatcagcagcttcctgctggcattcttcccatggtccctgag
gttgcacaggctgtaggagtcaatcaaggacatcacaccaaagagttcagtagagcagcc
cccaatcctgccaaggctacagtgacagccatgattgcaagagaattgttatatggtggc
acttctcctactgctgaaaccattattaaaaacagttccttgggtcatgttccccatggg
cctctcacgagaccctctgaacagttggattacctttctggtgttcagggaatccaggtg
gagtacaaagatttccccaaaaacaacaagaatgaatttgtatctcttataaattgttcc
tctcagccaccactgatcagccatggaattggaaaagatgttgaatcttgccatgatatg
gctgcattaaatatcttaaagttgctgtctgagttggaccaacaaagtacagagatgcca
agaacaggaaatggaccaatgtctgtatgcgtaaagcaagaaatggaaagtgaccccctc
ctcaaaccggctagctcaaacactttgggacaaacactggacaccactgcctaa
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